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Query: PF00593.24; Q8P343_XANCP/286-782; TonB dependent receptor, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DWNLYAPDWNRALAAAYCAPATRNAARCSFSGGVDNVDDAYYQSRALRDDDLFYVAGDFQPNDAISLHTQVYHHENKGQGHWWSPGQASNPGTPQALPISIRSTNYWINRTGGIASLGWDLGPHHLEAGLWYERNHHDVERNFYWIDGPVSDDKFLQDPDRRLFSQNYIITTRQFYVQGNFKFLDDRLSVDLGIKSPSTEMTARETPGIAVEAPVATGSIKASESVLPQIGLGYRLAEGQEVFASYAENIAAFQGGGAGGPLLVTQASFDASVGALEPEKSRTLEAGYRFVRDRFEASLVGYDVTFDNRLLSLNPCASIQQGTTPACTTRFFNVGSVSSRGGELTVIWKPTSYLQWYNSASINRSTYDDNYVQNGVTIATAGKTTVDTPKRMLASEIAFNYAGWNVNLRGKYTGERFYTYTNDQGFGGYTSFDAGAGYEFGQVSMLQSLKLSLNVTNLTDKRYASNLTAFANSDPNGRQLAFHASAPRQVFLTLDAKLast
1 -127.000PF00593.24; Q8P343_XANCP/286-782; TonB dependent receptor  ali  100  1DWNLYAPDWNRALAAAYCAPATRNAARCSFSGGVDNVDDAYYQSRALRDDDLFYVAGDFQPNDAISLHTQVYHHENKGQGHWWSPGQASNPGTPQALPISIRSTNYWINRTGGIASLGWDLGPHHLEAGLWYERNHHDVERNFYWIDGPVSDDKFLQDPDRRLFSQNYIITTRQFYVQGNFKFLDDRLSVDLGIKSPSTEMTARETPGIAVEAPVATGSIKASESVLPQIGLGYRLAEGQEVFASYAENIAAFQGGGAGGPLLVTQASFDASVGALEPEKSRTLEAGYRFVRDRFEASLVGYDVTFDNRLLSLNPCASIQQGTTPACTTRFFNVGSVSSRGGELTVIWKPTSYLQWYNSASINRSTYDDNYVQNGVTIATAGKTTVDTPKRMLASEIAFNYAGWNVNLRGKYTGERFYTYTNDQGFGGYTSFDAGAGYEFGQVSMLQSLKLSLNVTNLTDKRYASNLTAFANSDPNGRQLAFHASAPRQVFLTLDAK 497
2 -23.600PF14905.6; E6X881_CELAD/375-789; Outer membrane protein beta-barrel family  ali follow..  12  5...........................................................KEGHNIELEIDYNKFNQDEDALFSSSGNSVFPNYVDMVDTNRKQTIVNLDYVNPLDS------ISKLELGVESRNFETNVDYTSTGFNEGNLIPTPDT-------DFVYGMDIYSAYATFGQNY--KKWSYQAGLRVENVEVKADTN--------NIRTFSDQYTQLYPSAYITYSPNDKNQFQLSLSRRVDRPGLQQVNPREWSTPLISSFGNQNLVPQFTNSYEVNYTKRE---KITTGIFYRQIKDENRAVY----VDRLDLNKLILTYDNFDNTTAYGMEVSLNYKPLTWWSINGSFDLFSQTQRGIAIEEEV----------ENTAWNFRMNNSLKAKNLSFQVFGFYRGAN---KNIQFDVKSMYFINTGARYSF------GKGTLSLNFNDVFNTMRFAFDSTRPYASTGQFN------ESRTVYAGLSY. 391
3 -13.000PF14121.6; F0R5B6_BACSH/60-698; Putative porin  ali follow..  10  369............................................................................................................................................................................................................................EDAGAFSVEGNGNMNFNDTVRLEANAFIKNQNPT----FYYRHFHSKHYWWDNNDLSKMMRTRIEGKLSI--DRWRTQLKAGVENITNYTYLDNTSVVTGGEEGSETSASFLNNVGVAQHSGSIQV------SASLRQDFKVGILHLDNEVTYQ----TSSNQDILPLPKLTLYHNLYLSFG-VEMGADVRYFTEYYANKETRYKLGNYPLLNGYINLHL------KRTRIFLMMYNLGAHSYFLA--------------PHYPLNPRLFKIGISWN 636
4 -11.100PF05150.12; A0A0W0SPB7_9GAMM/33-312; Legionella pneumophila major outer membrane protein precursor  ali follow..  9.............................................................................................................................................................................................WDIGVQALYLQPIYSSQRGYELTQSDTFREVEHDWDWGYRLEGSYHFSTGNDITMTWHHSGYAGVTPFSGPFLVPFGITIDNRFDQVNLVMGQHVDGGLQYARIRLDATYNY----------AATIPVLAPAGFSQDRDADFNGVGPV---GIDYA--YDLVRGFSITANTASRFNNRFIFAPSGLVPINVYASKKSVVPSIEAKLGLKYAYEMPQGVFNIE-GGYQVLNYFDALHVFNLAANLKNSDFGL------YGPYLGAK--------WVG................................ 280
5 -10.200PF06980.11; A4VPB0_PSEU5/31-601; Protein of unknown function (DUF1302 topsan)  ali follow..  12  6.......................................................EIEGQFDSAMSIGASWSMADRDRDLVGINNGGTGFTQTGDDGRLNFKKGETFSKIFKGVHDLELRYRDSGVRGKYWYDFELKDESRLFKDISDSNRKEAAQSS----------GAQILDAFVYHNYSVGDLPGTVRLGKQESTFIGNSINSINPLDAAAFRRPGAEIKEGLIPMFYISQSLTDRLSMEAFYQLEWDQTVADNCGTFFAVDVVQDGPRAGDRDARDSGQF--GLALRWLGDATEYGAYFMNYHSRTPNVSTRSAGLATAAQLPGIIGTANGDIQLYGLSFSTT--LPTGTAWSGEISYRPNAFDQVLGAGRVTVVGE-THVGGLESYRLRGIADYDFAGINLKPNLSFSHDVDGYGPNGLFNEGSKAVSIGLDAEY-----QNMYTASLSYTDLVDRDFLA................................ 564
6 -10.100PF11854.8; A1S4W3_SHEAM/64-698; Putative outer membrane beta-barrel porin, MtrB/PioB  ali follow..  281................................................DLMELGLAYSNRLSREFSVRASYDFRDRDNKTPEYLYPLVTTDSIYRG---EYYNKGYDRTRQLLKLGAKYRFSRQDLDTLYRYDHNSYSE-------------------------LSRDSVFENHVEATVRGQIMAG---WRVSLKGEVSARRGDSYQTSSNTQMPNQSAMRQ-----------YFLADRDKRELRLMTDHY-FADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMNAGYPTEHLLLNGFLGMDWRDTTQFGSNSGVSRWTGE---------NRDEHTSASLGLKWQNLMDNKLSLGLDYGYSDGNSDTEVSLGLS----NIYGPYSATRHNVSAYANYQLDAMSLRIDWLYENYSDMDWGNDSLSHDYQYLGFSFSYQW......................................................... 635
7 -9.960PF03349.16; Q9KT62_VIBCH/16-428; Outer membrane protein transport protein (OMPP1/FadL/TodX)  ali follow..  136........................................................................................................................................................................LTDVKSFNLGLAGSYVNKEWSFGAGLDLIYGQGTMKRIAGTSFPASTIVVNPTTVIPARGNLGTVYEMDENNRFGLSYRYSPEFKAKDDY------------GQEITLPLPDIAEFSGFHKIENTQFAVHYSVQWIGWSDKIEFRNLVTSRSSVGALTKGSYDKMYEWQDGWHYSIGGTYYLNSDWTLRAGYMYDTSAQDSRTSI----------SVPDSDRQWLSAGFTYNIDKSNVDFGFTYLMGKDVAVSENDAGSKLTLLGLQYSRTF......................................................... 413
8 -9.160PF11059.8; Q6LS16_PHOPR/28-325; Protein of unknown function (DUF2860 topsan)  ali follow..  5............................................................................................................................................................................................DISLLTGFSN-TKSQFNTDIESTPSLESSGESDTKALIAPLGAIQYTFASDKQIFIGTSRSDLALGRFHIEAGYRQRFEGNGMVSLSYVPTETDTKIKGFRFQYKNILGSNFSMETSVGQQEIDSEKSGQKQNLSETEIASLDREG---NIIYLEGAYRQPIAPGRLLRGALNYTRFDADGDAMSYD--------------TYGAQLSIIQMLPSSSLALTFGYKNAQYEAENDEKQKDDLWSVFLAYEYN--EPFGWTDWGLVSLISNINFYNE----------------------DTLMATVGINYK 298
9 -9.150PF01389.17; OMP53_HAEIF/23-224; OmpA-like transmembrane domain  ali follow..  14  2.............................................................................................................................................................................................................................................QENTFYAGVKAGQGSFHDGINNNGAIKKGLSSSNYGYR-RNTFTYGVFGGYQILNQ-------------DNFGLAAELGYDDFGRAKLREAGKPKAKHTNHGAYLSLKGSYEVLDGLDVYGGVALVRSDYKFYEDANGTRDHKKGRHTARA-SGLFAVGAEYAVPELAVRLEYQWLGKYRPQDKPNTAINWIGCINAGISYRFGQ....................................................... 200
10 -9.010PF03922.14; Q98A70_RHILO/45-230; OmpW family  ali follow..  13  1.......................................................................................................................................................................................APSPWQIRLRALGVITE-------DSGYVNAVPGSGLSYSNTVTPELDISYFFTDNIAAELILGDGQGAIGGLGKVGKVWLLPPTLTLDFGAFEPYIG----AGVNYTIFYHQQVGSADDLKVKN------------------------TFGAALQVGFDYMVD----QHWGVNFDVKKLFLKPDFDVTVAGAKLTGK----AKLDPWVIGAGLTYRF................................................................................................ 186

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.