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current user: public |
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| Query: PF00817.20; Q74KV6_LACJO/16-168; impB/mucB/samB family, from PfamA32U |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 | |||||||
| # | Score | Template | Links and tools | %id | First | IDMDAFYASVEMRDNPSIRNKAVLIGGDPKKNKGHGVVATANYIARSYGAHSAMPTAKAVRLIPAEKLVIIQPNFEKYRAVSAEIHQLMHKITDRVESVALDEAYLDVTENKLNLTDPVRIAALLQERIYQRIGLTSSFGVSYNKFLAKMGSE | Last |
| 1 | -104.000 | PF00817.20; Q74KV6_LACJO/16-168; impB/mucB/samB family | ali | 100 | 1 | IDMDAFYASVEMRDNPSIRNKAVLIGGDPKKNKGHGVVATANYIARSYGAHSAMPTAKAVRLIPAEKLVIIQPNFEKYRAVSAEIHQLMHKITDRVESVALDEAYLDVTENKLNLTDPVRIAALLQERIYQRIGLTSSFGVSYNKFLAKMGSE | 153 |
| 2 | -10.100 | PF18182.1; A0A0F3GNU5_9BACT/377-494; minimal CRISPR polymerase domain | ali follow.. | 15 | 23 | .........................................................................DEEEVQMRSNILREAINKLKKLIKKTTKDHKSIIFAEGDNILF-DNTLLNEIQSVYKKETGLSSSIGYGKTLRDVMIALR | 105 |
| 3 | -6.980 | PF08004.11; F7XQB5_METZD/1-130; Protein of unknown function (DUF1699 topsan) | ali follow.. | 17 | 29 | ...................................................SNTDIFSLVMKCPDVKALHIPSSY--KKTISKSAQMYL-------SMQGIDLLEGDVWGHRKDINEYSEVSRNVFNRIIELR----SEGLAEDVIADKMAKE | 117 |
| 4 | -6.760 | PF01351.18; RNH2A_SCHPO/66-277; Ribonuclease HII | ali follow.. | 10 | 1 | .......LGVDEAGRGPVLG-PMVYA---------VAYCPVDFDLTNYGFADSKTLASLKR-------------LKLICNKSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEI-VSLASICAKVTRD | 161 |
| 5 | -6.520 | PF02007.18; MTRH_METTH/6-301; Tetrahydromethanopterin S-methyltransferase MtrH subunit | ali follow.. | 11 | 88 | ................DVTDAPFFIDSTSGEARIAGANYASEVGLEDRAIYNSVNMAADEAELEASASIVLGFN-GKIGIWEDGAGTIDKGLLEMAAECGIDKYLMDVTPLGQGAGVAVRTSFAVKSKWGYPVGSGIHNVPSAWDWLREYKK. | 237 |
| 6 | -6.090 | PF14930.6; S6ASH4_PSERE/188-292; Quinohemoprotein amine dehydrogenase, alpha subunit domain II | ali follow.. | 11 | 2 | ...............DALPGQWSFSGHMLTKGDVRGVMTVTADAGDTFKLDVKGQYADGTPFSGSGSAILYNG--GNVKVGETNMRQVFAALNGEMKEAEHDERGLDFSAAKA........................................ | 105 |
| 7 | -6.080 | PF10111.9; K9WLL1_9CYAN/5-252; Glycosyltransferase like family 2 | ali follow.. | 7 | 2 | .....................................................................VVIPVYNGEKTIQETINSVLNQTFQEFELIIINDGSTDKTLEVVSSIKDHRLQVFSYPNAGLAASRNRGTSHAIGEYISFIDGD | 85 |
| 8 | -5.970 | PF05165.12; GCH3_METTH/1-249; GTP cyclohydrolase III | ali follow.. | 12 | 159 | ..............................................................................NRVQHFLMKKLIKEGALLFFIGGDNFMSPCNGLE--PQGLLRIINEIDDEI--NVALKAGIGKAPTAEKAANLAD | 229 |
| 9 | -5.960 | PF02881.19; A1SZY9_PSYIN/5-82; SRP54-type protein, helical bundle domain | ali follow.. | 12 | 1 | ................................................................................LTERLSKTLKNVSGRLTEDNIKDTLREVRMALLEADVALPVVRDFIEAIKTRSGQDVAKSLSPGQAFIKIVQN | 76 |
| 10 | -5.950 | PF04009.12; D5E9I0_METMS/4-109; Protein of unknown function (DUF356 topsan) | ali follow.. | 13 | 16 | ......LHDLQQYGSMKFSSCPKRIEPNYADTLLVKVVGVPLRSNCKFAANAGSAINKLRKIHPPAHIVIISPRHDAYEELMDNSEIY................................................................. | 103 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16. |