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Query: PF00834.19; RPE_SYNY3/6-205; Ribulose-phosphate 3 epimerase family, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFLast
1 -103.000PF00834.19; RPE_SYNY3/6-205; Ribulose-phosphate 3 epimerase family  ali  100  1VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVF 200
2 -14.200PF04481.12; YCF23_CYACA/1-245; Protein of unknown function (DUF561 topsan)  ali follow..  14  17.VISGLTNLNYEHVLTIARASQRACVSYI-----------DIAADPQLVKVVKANVNIPICVSGLEIQP---IYNAVLAGADLIEVRNTVLSVCKIITLVEEIKKLCPRVPLTVTIPYILNQKDQI---VDYIQTEGNSISKCKNHCVQDLLRLSLQTLACTYELVKHTQLPISSGLSDVTVPLAFSLGASGIGIGKFVT 218
3 -12.700PF04131.14; NANE_PASMU/35-226; Putative N-acetylmannosamine-6-phosphate epimerase  ali follow..  19  1.............VAAMAQASVIGGAAGLRIEGIEN------------LKATRNVVNVPIDSPVRISPFLQDIEELAAAGADIIAFDGTDRVRPTREAIIKRIKELGCLAMADCSNFEEGMYCHNL---VEII-------GSTMSGYTGGEIPAEPDYQLVKDLNAAGCRVMAEGRYTPELAKTAIEIGAYSVTVGSAL. 176
4 -11.500PF00290.20; TRPA_MAIZE/94-347; Tryptophan synthase alpha chain  ali follow..  16  22.........DLATTAEALRLLDGCGADVIELGVIDGPIIQTMDAVLEMLREVTPELSCPVVLLSYYKPIMSRLAEMKEAGVHGLIV--PDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGANVNPRVESLIQEVKKVT-----NKPVAVGFGISPEHVKQIAQWGADGVIIGSAM. 225
5 -10.000PF03437.15; Y419_ARCFU/1-246; BtpA family  ali follow..  12  27..........IDKAVKDARAIEEGGADALILEYGDKPFLKEVAAMTVIACEVKRDVSIGLGINVLRNDAVAALAIAKAVNADFVRVNQEGILEGKAGEVMRYKKLVDCRADIAVKHAVHFASLEDYCLNAERSLADAV----GKTTGGEVSLEELKYAKKTL-----KMPVLAGSGVNAENAARILKW-CDGVIVGTYI. 226
6 -9.970PF00977.21; G8AG50_AZOBR/3-230; Histidine biosynthesis protein  ali follow..  12  32...............DQARLFESQGFEWLHLVDLNGAFEGK-PVNGKAVESILGAVAIPVQLGGGIRDLKT-IAHWLEKGVSRVILGTVALREPELVREACREFPGKVAVGIDAREGYVAVAGWAETSTIKALDLALKFEDSGVAAIIYTDINRVEATSDLAFH--LTTPVIASGGVSSIALKKEEDTGIEGVICGRALY 224
7 -9.820PF01729.19; NADC_ECOLI/131-295; Quinolinate phosphoribosyl transferase, C-terminal domain  ali follow..  15  59......................................................................................HIIASGS--VRQAVEKASWLHPDAPVEVEVENLEELDEALKAGADIIMLDNFET---------------EQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVDFISVGA... 152
8 -9.790PF01884.17; GGGPS_ARCFU/1-230; PcrB family  ali follow..  10  10....TKLDPDRTNTDEIIKAVADSGTDAVMIQNVTYEKARTIVVEPSDPSNVVYDVDYLFVPTVLNSADGDWITGKHAQWVRMHYTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPI---YSGTYGNPELVAEVKKVLD-------KARLFYGGGIDSREKAREMLRYADTIIVGNVIY 219
9 -9.770PF00215.24; PYRF_STRP1/5-224; Orotidine 5`-phosphate decarboxylase / HUMPS family  ali follow..  17  3.....IIALDFSSFEETKAFLDLFPAEEIGMELY-------YAQGPDIVRYIKSLGNVFLDLKLIPNTVRAAMAVLKELDIDMATVHA-AGGVEMLKAAREGLGQGPTLIAVTQLTSTSEDQMRGDQSLLESVLHYSKGAAKAQLDGAVCSAQEVEAIKAVTPTG-----TCLTPGIRPKTPNQARRIGSDYIVVGRPIT 208
10 -9.630PF06073.12; G2INC6_9SPHN/32-137; Bacterial protein of unknown function (DUF934 topsan)  ali follow..  16  1..............................................................................................................AVRIEPGEDARELLPHLERIALVEI----PSFGGRGY---------SAARILREAGYTGELRAVGDVAVDQLSHMIRCGFDSFTPDKP.. 78
11 -9.320PF00697.22; TRPF_YEAST/24-221; N-(5`phosphoribosyl)anthranilate (PRA) isomerase  ali follow..  15  1................AAECALDSDADLLGI------CVPN-KISSLVKAYKNSSGTPKYLVGVFRNQPKEDVLALVNYGIDIVQLHGDESW-----QEYQEFLGLPVIKRLVFPKDCNILLSAASQKPHSFIPLFDSEAGGTGELLDWNSISDWVG----RQESPESLHFMLAGGLTPENVGDALRLGVDV........ 177

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.