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Query: PF00977.21; G8AG50_AZOBR/3-230; Histidine biosynthesis protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IYPAIDLKDGACVRLLRGEMSQATVFNTEPADQARLFESQGFEWLHLVDLNGAFEGKPVNGKAVESILGAVAIPVQLGGGIRDLKTIAHWLEKGVSRVILGTVALREPELVREACREFPGKVAVGIDAREGYVAVAGWAETSTIKALDLALKFEDSGVAAIIYTDINRDGAMGGVNVEATSDLAFHLTTPVIASGGVSSIDDLIALKKEEDTGIEGVICGRALYDGRILast
1 -92.500PF00977.21; G8AG50_AZOBR/3-230; Histidine biosynthesis protein  ali  100  1IYPAIDLKDGACVRLLRGEMSQATVFNTEPADQARLFESQGFEWLHLVDLNGAFEGKPVNGKAVESILGAVAIPVQLGGGIRDLKTIAHWLEKGVSRVILGTVALREPELVREACREFPGKVAVGIDAREGYVAVAGWAETSTIKALDLALKFEDSGVAAIIYTDINRDGAMGGVNVEATSDLAFHLTTPVIASGGVSSIDDLIALKKEEDTGIEGVICGRALYDGRI 228
2 -15.900PF04131.14; NANE_PASMU/35-226; Putative N-acetylmannosamine-6-phosphate epimerase  ali follow..  14  2..............................AAMAQASVIGGAAGLRIEGIE------------LKATRNVVNVPI----GIVFLQDIEELAAAGADIIAFDGTDRVRPTTREAIIKRIKELGCLAM---------------ADCSNFEEGMYCHNLGVEIIGSTGYTGGEIPAEPDYQLVKDLNAA-GCRVMAEGRYNTPELAKTAIEI---GAYSVTVGSAL..... 176
3 -15.400PF05690.14; THIG_XANCP/11-258; Thiazole biosynthesis protein ThiG  ali follow..  17  115..........KAAEQLVADGFEVMVYTSDDPILAKRLEEIGCVAVMPLAAPIGSGLGIQNKYNLLEIIENAKVPIIVDAGVGTASDAAIAMELGCDGVLMNTAGARDPILMASAMRKA.............................................................................................................. 224
4 -15.000PF01207.17; DUSB_ECOLI/13-321; Dihydrouridine synthase (Dus)  ali follow..  17  8.........................ITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEDAARINVESGAQIIDIGSALLQYPDVVKSILTEVVNAVDVPV-----TLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGAEYDSIRAVKQKVSIPVIANGDITDPLKARAV--LDYTGADALMIGRA...... 214
5 -14.300PF04481.12; YCF23_CYACA/1-245; Protein of unknown function (DUF561 topsan)  ali follow..  13  8.....DIANKKAIKVISG---LTNLNYEHVLTIARASQRACVSYIDIAA----------DPQLVKVVKANVNIPICVS--GLEIQPIYNAVLAGADLIEVGNLSVCKIITLVEEIKKLCPRVPLTVTIPY---------ILNQKDQINLCKQLESLRVDYIQTEGNSISKCKNHQTLACTYELVKHTQLPIICSSGLSD----VTVPLAFSLGASGIGIGKFVTSYY. 221
6 -13.100PF04309.12; R7DC54_9FIRM/14-187; Glycerol-3-phosphate responsive antiterminator  ali follow..  17  107......................................ENILSQQHSVHPDFIEVLPGAMPKVIHRLCTEIKVPVIAGGLITDKESVMGALTAGATAVSSTNHKV........................................................................................................................... 173
7 -12.200PF00218.21; TRPG_NEUCR/252-514; Indole-3-glycerol phosphate synthase  ali follow..  18  73............................DAPSQARKYALAGASVISVLTEPEWFKGSIDDLRAVRQVLNGMPNRPAV---IFDEYQILEARLAGADTVLLIVKMLEYELLLYKYSLSLGMEPLVEVQNTE-------------------MATAIKLGAKVIGVNN--RNLESFEVDLGTTGRLRSMVDTFLCALSGINTHQDVLDCKR---DGVNGILVGEAIMRAP. 254
8 -12.000PF02581.17; Q6APA6_DESPS/26-212; Thiamine monophosphate synthase  ali follow..  12  6....................CEQLSAGRSDKEWLDNVLAGGAKIVQLRDKKSDDRLLLEKAKYFREKTREAGALFLIN------DRFDIGLLADSDGIHVG-----QGDLPPEEIRRLTPDWIIGQSCND----------LAEVEALGAQVQAGSSAVDYYIYRTDTKEGLHTFLGAGDIQQISAACPLPFTVMGGI----KWDHIPELAAAGVRRMAVVTAI..... 187
9 -10.900PF03437.15; Y419_ARCFU/1-246; BtpA family  ali follow..  23  169............................................ADAVILTGKTTGGEVSLEELKYAKKTLKMPVLAGSGV-NAENAARILKW-CDGVIVGTYIKRGGLVDAERVRRIVRAA.......................................................................................................... 244
10 -10.700PF01884.17; GGGPS_ARCFU/1-230; PcrB family  ali follow..  13  13............................DPDEIIKAVADSGTD---AVMISGTQNVTYEKARTLIEKVSQYGLPIVV---PSDPSNVVYDVDYLFVPTVLNSRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPIIYIEYSGTYGNPELVAEVKKVLKARLFYGGGIDSREKAREMLR----YADTIIVGNVIYEK.. 221
11 -10.500PF00478.25; G0AB65_COLFT/7-472; IMP dehydrogenase / GMP reductase domain  ali follow..  17  238...VVDTAHGDRVKWVKQNFPQVEVIGGNIAAAAKALADHGADGVKV-IVAGVGVPQISAIANVAQALKGTGIPCIADGGIRFSGDIAKALAAGASTVMMGSMFAGTEEAPGEVILFQGRSYKSYRGMGSLGAMSDGSADRYFQDSANKADKFVPEGIEGR----VPYKGSVLTILYQLIGGVRSSMG-------GCATIDELREKAEFVEITSAGMRESHV...... 465
12 -10.300PF01791.9; Q8TJ99_METAC/11-248; DeoC/LacD family aldolase  ali follow..  10  1MLFAGD--QKVEHLNDDFFEEGVPEDDADPEHLFRIAARSKIGVFATLGLIARYGMDYKDVPYLVKVNSKTHLVGTSQADPFSNLEFKENSGLNILGVGYEAEMLVQAAQVVYDAHQHGMVSVLWIYPRGAAVK----DEKDPHLIAGATGVGACLGTD---FVKVNYPKKEGEKSAEIFKEAIKAAGRTKVVCAGGSSDEAEAFLKQIHISRAQGNATGRNIHQ... 237
13 -10.000PF03060.15; D2YW28_ZYMMO/6-318; Nitronate monooxygenase  ali follow..  25  135..............................ITNMREAESLGADVLVATGYDEG-TRAIGTFTVVPTMVDAVDIPVMATGGINDRRGVKAAFALGAEGVYIGTRFIVTKE....................................................................................................................... 216
14 -9.970PF00834.19; RPE_SYNY3/6-205; Ribulose-phosphate 3 epimerase family  ali follow..  12  16...............................EEIKAVDEAGADWIHVDVMDGRFVPNTIGPLIVDAIRPLTKKTLDVHLMIVEPEKVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPK--------IRALRQMCDELDPWIEVDGGLKP----NNTWQVLEAGANAIVAGSAVF.... 200
15 -9.480PF00290.20; TRPA_MAIZE/94-347; Tryptophan synthase alpha chain  ali follow..  19  115IVPDLPYVAAHSLWSEAKNNNLELVLLTTPADRMKEITKASEGFVYLVSVNGVTGPRAN-ESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVR.......................................................................................................................... 227
16 -9.150PF03932.14; CUTC_ECOLI/3-200; CutC family  ali follow..  14  7............................YSMECALTAQQNGADRVELCA-APKEGGLTPSLGVLKSVRQRVTIPVHPGGDF--LEDVRTVRELGFPGLVTGVLDVDDMPRMEKIMAAAGPLAVTFHRAFD-----------MCANPLYTLNNLAELGIARVL-TSGQKSDALQG--LSKIMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHS............ 195
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;