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Query: PF01056.18; G1KK08_ANOCA/11-349; Myc amino-terminal region, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPLTGPSFPSRTYDYDYDSVQPYFYFEDEEENFYLSAHNRGCELQPPAPSEDIWKKFELLPTPPLSPSRRGGCYYPSGADQLEMVTELLGSDAVNQSFICDPDDDAFVKSIIIQDCMWSGVSAAAKLQKVVSEKLASYQAARRDGGINATHSRGGSTGSTSPTSPQASPSSTASSCSSSSASSSPTYLQDLGASAADCIDPSVVFPYPLAEKTPKIEEEEEAISPEVHPGTLLDTPPNTSSDSEEEEAQEEEEEEIDVVTVEKRQPAAKRSESSTHSSRGHSKHHHSPLVLKRCHVPIHQHNYAAPPSTRVEYSAAKRLKLDSGRVLKQISNNRKCSSPLast
1 -133.000PF01056.18; G1KK08_ANOCA/11-349; Myc amino-terminal region  ali  100  1MPLTGPSFPSRTYDYDYDSVQPYFYFEDEEENFYLSAHNRGCELQPPAPSEDIWKKFELLPTPPLSPSRRGGCYYPSGADQLEMVTELLGSDAVNQSFICDPDDDAFVKSIIIQDCMWSGVSAAAKLQKVVSEKLASYQAARRDGGINATHSRGGSTGSTSPTSPQASPSSTASSCSSSSASSSPTYLQDLGASAADCIDPSVVFPYPLAEKTPKIEEEEEAISPEVHPGTLLDTPPNTSSDSEEEEAQEEEEEEIDVVTVEKRQPAAKRSESSTHSSRGHSKHHHSPLVLKRCHVPIHQHNYAAPPSTRVEYSAAKRLKLDSGRVLKQISNNRKCSSP 339
2 -7.500PF16614.5; H3B6A9_LATCH/566-674; Unstructured region two on RhoGEF 6 and 7  ali follow..  30  2...................................STTGQSRGPLEPPKIPKPWTLSCLRPAPPLRPS............................................................................................................................................................................................................................................................................... 34
3 -6.870PF18349.1; O67434_AQUAE/167-259; PAZ domain  ali follow..  23  17.......IRVKPIGIDFGRVQDVFKAKEKGEEFFRLCMERSTHKSSKKAWEELLKNRELYPATILKP................................................................................................................................................................................................................................................................................ 91
4 -6.640PF17654.1; G3RDE9_GORGO/14-147; Selenocysteine tRNA 1 associated proteins  ali follow..  15  90......PLEDPHLHLNIEESNQEFM--VKSEELYDSLMNCH------------WQPLDTVHSEP................................................................................................................................................................................................................................................................................... 134
5 -6.450PF12417.8; G4UTI1_NEUT9/289-382; Zinc finger protein  ali follow..  15  4..............LDFDCCKPWYHRPPLPQSNGNENGNHGAGSEYQPADSQLWEEFK......................................................................................................................................................................................................................................................................................... 79
6 -6.420PF03461.15; R5DXY6_9BURK/1021-1115; TRCF domain  ali follow..  15  1..............LHAPSLLRSDYVPDVHNTFYKRLAQVKNKEDLYQIQEEIADRYGKLTQEAKN................................................................................................................................................................................................................................................................................. 54
7 -6.190PF09786.9; B9HQ86_POPTR/12-670; Cytochrome B561, N terminal  ali follow..  1.......................................................KFAAYQNPAFSAALTAKSLRPSSSASAFSLLSTISRENGLIEKMSFRIFSQEVAYLFAK--AAQAVVGLLFIGSVFSKAISLYRVKIAGVRITSPSKDARDQPQLTNRQLGLIGVKPKVEPVVSESSKKPPKSNPTSSASNVLVPIHQLITCSHQKSRVGSDKSNAGSGNKMASFSTPSKSRNSPSFYLVPGANSPLPSVQSSPAIDSAVSTPWSDKRASYTKEIRTEEQLEQFLAEVDEKISESAGKYATPPPTIGGFGMASPNTVASPANTPGVTRSTPLRP 294
8 -6.110PF08192.11; SSY5_YEAST/2-693; Peptidase family S64  ali follow..  7...............................................................................................................................................NKKKNEEKENTDLPADNEQNAAETSSSNVSGNEERIDPNSHDTNPENANNDDASTTFGSSIQSSSIFSRGRMTYGTGASSSMATSEMRSHSSGHSGSKNSKNLQGFKDVGKPLRAVSFLSPVKEEESQDTQNTLDVSSSTSSTLA---TSENARENSFTSRRSITLEYIHKSLSELEENLVDIMDDIHQDVISISK 199
9 -6.090PF07389.12; B6_VACCW/1-97; Protein of unknown function (DUF1500 topsan)  ali follow..  15  1........MSSSVDVDYDAVRAFLLR-------HYYNKRFIVYGRSNAILHNIYRLFTRCAVIPFD---DIVRTMPNESRVKQWVMDTLNGIMMNERDVSVSVGTGIL....................................................................................................................................................................................................................................... 91
10 -6.030PF10838.8; UL121_HCMVM/15-180; Protein of unknown function (DUF2677 topsan)  ali follow..  11  39............WEIQYSSTRVLVFHDEGEDDVHLT----DTHHCTSCTHP-----YVISLVTPLTINAT............................................................................................................................................................................................................................................................................. 89

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.