current user: public
If you have questions about the server, please let us know.

Query: PF01058.22; Q31DZ5_HYDCU/551-699; NADH ubiquinone oxidoreductase, 20 Kd subunit, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst CTGNSEAFIKTVNPTIDELILKFISLDYHELLMAASGPHSETRLDQLIEEDQGDYILIVEGAVPLGMGGNFLRIGPQGETGEALLKRVAQHASAVMAVGSCAFDGGVVAAAPNPTGAVGVSEALGRDDIINLPGCPVNPINVVGTLLHYLast
1 -74.600PF01058.22; Q31DZ5_HYDCU/551-699; NADH ubiquinone oxidoreductase, 20 Kd subunit  ali  100  1CTGNSEAFIKTVNPTIDELILKFISLDYHELLMAASGPHSETRLDQLIEEDQGDYILIVEGAVPLGMGGNFLRIGPQGETGEALLKRVAQHASAVMAVGSCAFDGGVVAAAPNPTGAVGVSEALGRDDIINLPGCPVNPINVVGTLLHY 149
2 -7.280PF00994.24; CINAL_DESPS/4-169; Probable molybdopterin binding domain  ali follow..  16  6..GDELTSGRILNTTSSFAAKQLFEAGYEIYGMSTIGDTPEVIGEALKRSIERVDAVLVTGGLSTDDDLTNEAVSRAFGLPTLPNLEILSIVRAHFAQITDAPVGQLEKLAWLPEGAEVFDPQSGMAGIFFLPGVPHQMKALMVEHV.. 160
3 -7.080PF17034.5; YAG1_SCHPO/778-905; Zinc-ribbon like family  ali follow..  12  1CNFCRKPI---FPFSNRNECNNLPTPIQRGVSKAGPAKHLGKSCPHCGQPLPKCSVCGFSLGDEDVPQKDDFSQKPQNYVKEVNLQKSRFGLWFSFCL-NCG-HGA----------ASHASEWFSTHTICPVPNC.............. 121
4 -7.040PF12336.8; B1PXF9_PIG/112-202; SOX transcription factor  ali follow..  14  5..................................................................................RKTKTLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQDQLGY 71
5 -6.330PF04724.13; Q9C9V4_ARATH/40-388; Glycosyltransferase family 17  ali follow..  14  84....EVELLTIRWKELYPYVTQFVLLESNSTFTGLP--VFAGHRDEFKFIEPRLTYGSIGGRFKKGEKNPFYEEAYQRIALDQLLRIAGITDDDLLIMSD-------------------VDEIPSRHTINLLRWCDDIPQILHLRLKNY 210
6 -6.130PF12587.8; H2J0P9_RAHAC/6-91; Protein of unknown function (DUF3761 topsan)  ali follow..  55  74..................................................................................................GTCSGHGGV.......................................... 82
7 -6.110PF05582.12; U5L4K7_9BACI/4-285; YabG peptidase U57  ali follow..  11  110........LDGDPSYLKKCLSLYEKIGVPVTGIHCNEKEMPSKIGQLIDYYR-PDILVITG-SKAKGKVTDINAYRHSKHFVQTVREARRLDQLVIFAGACQSHGANFASSPSRVNIHALDPVYIVAKISFTP................ 247
8 -5.860PF16953.5; M3YXX7_MUSPF/342-578; Protein-only RNase P  ali follow..  7  7CSGCGKTMIHLSPEEYEFLKGEIMRDVIDGGDQYKKTTPQELKRFQSFVKCCPPFDIVIDGL------AKTFPKVRESQVLLDVVSQLAKQNLQLLVLGR-------MLTQHSRWRKDEMKKVQQQASCFFADNISEDDPFLLYATLHS 148
9 -5.730PF08859.11; E3GHY0_EUBLK/7-112; DGC domain  ali follow..  11  1.............................................................GIIACSGEECLGGTISRLAVRKMMETLRPGAVSTLCLPLFI------------AGGDQERAFAQNHPTISVDGCS............. 63
10 -5.650PF03063.20; R6MRD8_9BACE/5-545; Prismane/CO dehydrogenase family  ali follow..  11  386.........................................................VKSGAIRRFVVMAGCDGRMKSRDYYTDFAKALPQDTVILTAG-CAKYK---------YNKLPLGDINGIPRVLDAGQCNDSYSLAVIALK.. 465
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.