current user: public
If you have questions about the server, please let us know.

Query: PF01102.18; GLPA_HUMAN/34-146; Glycophorin A, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst SVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSPDTDVPLSSVEIENPELast
1 -104.000PF01102.18; GLPA_HUMAN/34-146; Glycophorin A  ali  100  1SVTKSYISSQTNDTHKRDTYAATPRAHEVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSPDTDVPLSSVEIENPE 113
2 -11.100PF15102.6; TM154_HUMAN/24-165; TMEM154 protein family  ali follow..  16  11.......TVESERPNKVTIPSTFAAVTIKETLNANINSTNFAPDENQLEFILMVLIPLILLVLL-----LLSVVFLATYYKRKRTKQEPSENVKVPIFEEDTP-SVMEIEMEE 125
3 -7.620PF17609.2; UL124_HCMVM/25-150; Family of unknown function  ali follow..  24  6STVNSTATGVTSDSQQNTTQLPASSAAALSLPSASAVQAHSPSS---------FSDTYPTATALCGTLVVVGIVLCLSLASTVRSKELPSDHEPLEASDVEAPPLPEKSPCPE 113
4 -7.460PF17204.3; G0N0U7_CAEBE/17-92; Sid-5 family  ali follow..  23  17..........................................................VYLLAISIFLLVLNVLSIVFFNRHSLIKFYRARFHPLPSSET............. 58
5 -7.200PF05425.13; Q1QFL4_NITHX/201-307; Copper resistance protein D  ali follow..  21  2................................................HATQRFSTLGLLSVGVLLITGVVNACILVEYGRLVILK........................... 48
6 -6.630PF04727.13; F7D0C0_CALJA/111-272; ELMO/CED-12 family  ali follow..  5  1....ADVEKLRREPYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDF------MGLLGLYNLQYFAAQQVLSDSLHPKCRYSFAIVGINITDLAYN... 108
7 -6.470PF11432.8; F2NQS8_MARHT/15-127; Protein of unknown function (DUF3197 topsan)  ali follow..  13  15.............................LIVTLVTDWQDQRDRARYALFIRGAKTPILTEDAFGPAFGEPGRRALAEAKFYEAVLPPSEYQGLFDLEPETAYRRLVASANP. 107
8 -6.460PF02960.14; K1_HHV8P/160-279; K1 glycoprotein  ali follow..  24  20......................TPETHTVSVSSTTTLFVMKEVKSTYLYIQEHLLVFMTLVALIGTMCGILGTIIFAHCQKQRDSNKTVPQLHDLCTEDYTQPVD........ 118
9 -6.310PF05808.11; F6ZBL8_HORSE/19-167; Podoplanin  ali follow..  16  62..TESITDIHTEVLPTPGNTVHAQEETQITTPNVVASHSMEKVGEETQTTVEDNGLVTVTLVRI------VGVLLAIGFISRVII............................ 139
10 -6.200PF13190.6; L0HEV0_METFS/13-103; PDGLE domain  ali follow..  13  8GVAVFFASGDPDGLESTALVVQGQKELTGSTPEGAEIHEDLNGKFSYESPMPDYSLGEAMGSTGGIVAIAVGTILAFLVVL................................ 88
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.