current user: public

If you have questions about the server, please let us know.

Query: PF01128.19; ISPD_ECOLI/8-229; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220
# Score Template Links and tools%idFirst VCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRLast
1 -116.000PF01128.19; ISPD_ECOLI/8-229; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase  ali  100  1VCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTR 222
2 -21.400PF02348.19; NEUA_MOUSE/44-298; Cytidylyltransferase  ali follow..  11  1.AALVLARGGSKGIPL---KNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHEIQKGVREVTEPLNLNPAKRPRRQDWDGELENGSFYFAKRHLIEMGYLQGGKMAYYEM---------RAEHSVDIDVDIDWPIAEQRVLR 218
3 -16.400PF12804.7; Q5FTR9_GLUOX/6-165; MobA-like NTP transferase domain  ali follow..  22  1..GLILAGGASRRMGTD--KAALDYHGKPQLQAAFEVLT--PVVEQCFVSVRPGQTS--DPLRSSFPQIVDTVDVDGPAAGLLSAHRAYPDVAWLVL-----PMLDRGTLDTLIAARDGEHVAVSYRSEHDGLPE....................................................................................... 126
4 -9.120PF01983.16; COFC_ARCFU/1-205; Guanylyl transferase CofC like  ali follow..  11  1MRILIPFNNPKSRLSSILSEEERKELARLMLLDVIDAAKPFGEIKVVCPSELDVEGVEV----------------VVDTSDLNTTVNKVMDEAPLAVIMSDLPLLSEEVLKRFFETE-------------GDVVVAPGRKGGTNMLLVRKRGFRVSYHFGSFFKHL-------------------EMARKMGMKAKIFDSFYSSVDIDDESDLL........ 168
5 -8.780PF01704.18; E6ZRZ1_SPORE/65-474; UTP--glucose-1-phosphate uridylyltransferase  ali follow..  10  52LAVLKLNGGLGTTMGCTGPKSVIEVEGMTFLDLSVRQIEHLNSSHNFILMNSFNTDDDTARVIQKYANHNV--------------ILTFNQSRYPRVNKESLLPCPRSATDNKNLWYPPGHGDLFDAMNNSGLLDRLIAAGKEYLFVSNVDNLGADVDLN-----IYQHMIDTQAEFISEVTDKTKADVKGGT-LIDYEGTIRLLEIA.............. 245
6 -8.390PF00483.23; GLGC_SYNY3/15-285; Nucleotidyl transferase  ali follow..  13  2..AIILGGGAGTRLYKLRAKPAVPLAGKYRLIDIPVSNCINSEIVKIYVLTQFNSASLNRHISRAYNFSGFQEGFVETADAVRQYLWLFREVDEYLILSG--DHLYRMDYAQFVKRHRET--NADITLSVVPVDDRKAPELGLMKIDAQGRITDFSEKPQ.............................................................. 176
7 -7.710PF02287.15; B8FDN7_DESAA/51-183; Dehydratase small subunit  ali follow..  12  8.............LGIKRKDLVKSATGLGLDDITIEKVVSGE--------IQFDDIKTRPETLAYQNEIAKSVNRPNLANNLARAMTRIPDARLLEMYNFLRP-AAKQEMISMAEELEQKYQAPACAKLVREAAD....................................................................................... 124
8 -7.520PF11135.8; ICP18_FRG3G/14-157; Protein of unknown function (DUF2888 topsan)  ali follow..  18  22..................................................................................................DLVNLSVSTEFQVKITMTPHHDLGTFVVEPKNVFSIKRAVKGDAAFK--VERAAGWLPDTPQV----LTLFVYERLNPVEWHSECMYENLETDGGTV-IVPGEATGQRFGTATEVPTM...... 132
9 -7.350PF13641.6; A4XR32_PSEMY/86-342; Glycosyltransferase like family 2  ali follow..  10  4VYLLVTSFRIEALT-------------AMVYRSVIREAIDCGYPSTLVCSIVELSDELLIKNLWAQKLDIVRIPGTGKRDGLAHGFRAIDRDAVVAVIDG--TVLEPGVVRKSVPWFKLFPNVGGLTTNEFHKLRFAQRHLNMCSMALSKRVLTMTGRMSVFRASVVTDP---------DVESDHLEHWRLG-----------RFQFLTGDDKSSWYSLMRL 220
10 -7.260PF16924.5; D3E6N7_GEOS4/7-123; Dipicolinate synthase subunit A N-terminal domain  ali follow..  11  1.....................................................................TVFVGGDARQIEVIRKCAEMDASVMIAGFEKLQDSFQGVTREPLTPELLSDADALILPVVGCDDEGRVSALFSEGPLRLQEEHIAAMPGHGVIYTGMAKPYLRSCDKYKIKLVE....................................... 115

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24