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Query: PF01207.17; DUSB_ECOLI/13-321; Dihydrouridine synthase (Dus), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENFALast
1 -108.000PF01207.17; DUSB_ECOLI/13-321; Dihydrouridine synthase (Dus)  ali  100  1IAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENFA 309
2 -46.700PF05690.14; THIG_XANCP/11-258; Thiazole biosynthesis protein ThiG  ali follow..  11  11LLTGTGKFKDLDETRLATEAAAAQIVTVAIRRVNIG------------QDPNAPSLLDVLPPDRYTLLPNTAGCYTAE-DAVRTCRLARELLDGHNLTKLEVLGDERTLYPDVVQTLKAAEQLVADGFEVMVYTSD--DPILAKRLEEIGCVAVMPLAAPIGSG-LGIQNKYNLLEIIENAKVPIIVDAGVGTASDAAIAME-LGCDGVLMNTAGARDPILMASMRKAIEAGREAFLAGRIPRKRYA.............................................................. 243
3 -17.000PF04309.12; R7DC54_9FIRM/14-187; Glycerol-3-phosphate responsive antiterminator  ali follow..  17  1..................................IIAAVKNMEDLEKCCSLSDIHVVFILFGDICSIADIVQKVKEAGKIAM-IHVDL-IGGLSTREIAVEFLKNNTEADGIITTKPALVRKARELSVLRYFLLDSMAYENILSQQHSVHPDFIEV---------LPGAMPKVIHRLCTEIKVPVIAGGLITDKESVMGALT-AGATAVSSTNHKV---W......................................................................................... 174
4 -15.000PF00977.21; G8AG50_AZOBR/3-230; Histidine biosynthesis protein  ali follow..  17  26.......FNTEPADQARLFESQGFEWLHLVDLNGAFEGKPVNGKAVESILGAVAIPVQLGGGIRDL--KTIAHWLEKGVSRVIL--------------GTVALREPELVREACREFPGKVAVGIYVAVAGWAETSTIKALDLALKFEDSGVAAIIYTDINRDGAMGG-VNVEATSDLAFHLTTPVIASGGVSSIDDLIALEEDTGIEGVICGRA............................................................................................... 222
5 -11.900PF03060.15; D2YW28_ZYMMO/6-318; Nitronate monooxygenase  ali follow..  17  14IQAPMSWITNADFVAAVSEAGGLGVLGPHAGYHTPPKDPQEILDRVRKSLTDKPFGLNLLDPLDDFTKAWLNIAFEEGVTHFVSVGNADNRVFNLKEHDGIIIHRP-----------------------------LTASITNMREAESLGADVLVATG-YDEGGMIPTRAFTVVPTMVDAVDIPVMATGGINDRRGVKAAFA-LGAEGVYIGTRFI............................................................................................. 212
6 -11.800PF01180.21; PYRD_SCHPO/104-430; Dihydroorotate dehydrogenase  ali follow..  16  66.VINRYGFNSIGHDAILAKIKTSPQLLKQFDANPASCTDPAVLGVPRSLIPNKFLGINL-GNEIEDYVEGVRTFGNF-ADILVINVSSPNTPGLRNLQKKSALSTLLTAVVSERNKLNSPHPPVLVKIAPDLNEEELT--DIADVLKKCKIDGVIVGNTTVQRGLSGPPALNTLRTLRKHLDIPIIGCGGISSGKDAIEYAR-AGATMVQVYTAGYDGPVIAHKIKQEIL............................................................................... 324
7 -11.400PF04481.12; YCF23_CYACA/1-245; Protein of unknown function (DUF561 topsan)  ali follow..  13  14AIKVISGLTNLNYEHVLTIARACVSYIDIAADPQLVKVVKANVNI--------PICVSGL------EIQPIYNAVLAGADLIEVGNYESLYKRNTVLSVCKIITLVEEIKKLCPRVPLTVTIPYILNQK--------DQINLCKQLESLRVDYIQTEG-VQDLLRLSLQTLACTYELVKHTQLPIICSSGLSDVTVPLAF--SLGASGIGIGKFVTSYY.......................................................................................... 221
8 -10.700PF00724.20; J8Q439_SACAR/16-368; NADH:flavin oxidoreductase / NADH oxidase family  ali follow..  15  18VIPPLTRMRAVEYYTQRAERPGTLIVTEGTFISPQSGGYDNAPGIWSIHEKKSFAWVQLWGWAAKEYVQAAKNSIAAGADGVEIH-GYLLNQFLDPHSGGSIENRARFTLEVVDAIVEAIG-KVGVRFSP--TGIVAQYAYVLGELERRAKAGKRL-TNPFLTEGEGEYTEGTNDFVYSIWKGPIIRAGNFALHPEVVREEVKDPRTLIGYGRYFISNPDLVDRLEKGLP............................................................................... 351
9 -10.400PF13714.6; B9K4D9_AGRVS/8-247; Phosphoenolpyruvate phosphomutase  ali follow..  14  19...................................................................IGTARILAALGFPALATT-SAGMAFSLGVPEGIVSRDD---TLDNCRAIVAATSLPVSADLEKGFGDSPESAAETIVTAASIGLAGCSLEDHTGQRDNPVYDFTLAVERIAAAAEA-LWGRPDLDDTIKRLQAFEKAGADVLYA.................................................................................................. 174
10 -10.200PF04131.14; NANE_PASMU/35-226; Putative N-acetylmannosamine-6-phosphate epimerase  ali follow..  12  1..................................................................VAAMAQASVIGGAAGLRIEVNVPIIGIVKRDSPVRISPFLQDIEELAAAGADIIAFDGTDRVRPTTREADCSNFEEGMYCHNLGVEIIGSTMSGYTGGEIPAEPDYQLVKDLNAAGCRVMAEGRYNTPELAKTAIE-IGAYSVTVGSALTRLEHIVSWFADAVKS.............................................................................. 192

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.