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Query: PF01210.23; GPDA_COXBU/7-162; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQFSLast
1 -81.300PF01210.23; GPDA_COXBU/7-162; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus  ali  100  1PIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQFS 156
2 -22.900PF02558.16; Q9K9R6_BACHD/6-154; Ketopantoate reductase PanE/ApbA  ali follow..  20  1.VAVIGSGSIGLLLYAYLKLANWPALLVTNRPEQADHLNKEGLTFVAKSGEHQPISVTATPLSSFSAEEAEVGFITVKSFAVKALLPQLQRK--KWDGLVFFQNGM.................................................. 103
3 -21.000PF10100.9; H6NF63_9BACL/6-429; Staphylopine dehydrogenase  ali follow..  16  2RVLILGTGPASVQLAVTLKNKWNCIGIAGRESVRSEPFFTADESGRRVRADIQNEKHHVFQGYGTITGEWDTLILAVTTDAYVAVLKQIHGELLKRVRCMLLLSPTFGSNRLVRHYMNGIQSSAEIISFSTYSCATRWAGPRPSHQVIT....... 162
4 -18.800PF03807.17; Q21544_CAEEL/2-98; NADP oxidoreductase coenzyme F420-dependent  ali follow..  15  1KIGFIGAGKMAQALARGLINSGR---------TADNIIASSPKRDEVFLDQCKALGLNTTHDNAEVVQKSDVVFLAVKPVHVSKVASEIAPALSKEHLVVSIALG................................................... 97
5 -18.000PF03721.14; UGDH_CAEEL/10-205; UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain  ali follow..  13  2KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT-AKIAEWNSDKLPIYEPGLDENLFFSSDIPKAIAEADLIFISVNTKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNLKFQVLSNPEFLAE----NPDRVLIGGESSPEG 186
6 -16.200PF07991.12; ILVC_METAC/15-178; Acetohydroxy acid isomeroreductase, NADPH-binding domain  ali follow..  18  5TIAIMGYGSQGHAHARNLHESGLNVVVGLRKGSSSWAKAE--------------SDGLKVMTVEEAAKAADVIMILLPDEKQASVYYSQIEPSLEAGNALVFAHGF.................................................. 96
7 -16.100PF03446.15; Q8FTI1_COREF/15-184; NAD binding domain of 6-phosphogluconate dehydrogenase  ali follow..  13  1QIGVVGLAVMGSNLARNFARNGHTVAVYNRSTDKTDKLISDYATD---------GNFIPTKTVEDFVAALEKPRRAIVMAATDAVINQLADAMEEGDIIIDGGNALYTDTVCREKEMAA----RGRHFVGAGISGGEEGALNGPSIMPGGPKESWE 147
8 -16.000PF10727.9; Q743Y6_MYCPA/8-128; Rossmann-like domain  ali follow..  19  6KVGIISAGRVGTALGVALERADHVVVCSAISHASRQRAQRR--------------PDTPVATPPEVAAGAELLLLAVPDSELAGLVSGLAATVRAGTIVAHTSGANGVG............................................... 104
9 -14.300PF02056.16; CHBF_ECOLI/6-188; Family 4 glycosyl hydrolase  ali follow..  13  1KVVTIGGGSSYTPIKRYHELPVSELWLVDVEGGKPKLDIIFDLCQRMIDNAGVPMKLYKTLDRREALKDADFVTTQLRVGQLPARELDER---------IPLSHGYLGQETNGAGGLFKGLRTIPVIF----DIVKDVEELCPNAWVINFTNP... 146
10 -11.900PF02737.18; Q2YR99_BRUA2/5-183; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain  ali follow..  13  2.VGIIGAGQMGSGIAHVCALAGYNVLLHDAAPDRLEKVASGKLQEEQRADAM--KLIRPANSMED-LAGVDLAIEAATEDE-RKIFAQLCPVLNPEAILATNTSSISITRLASTTDRPERFIGIHFMNPVPVMKLVELVRGIATEEDTFRKSNDFV 167
11 -11.000PF01113.20; DAPB_VIBCH/2-125; Dihydrodipicolinate reductase, N-terminus  ali follow..  16  2RIAIAGAGRMGRNLVKATHQNPLSELGAGSERPESSLVGVD------------KQGIVLVDNLEQAVEQFDVIIFTAPA----STLANLALCEQHGKKLVIGTTGFTDAQRQTIEQAAKKIP-----IVMAPNY...................... 124
12 -10.900PF00670.21; SAHH_DICDI/191-351; S-adenosyl-L-homocysteine hydrolase, NAD binding domain  ali follow..  25VAVVAGYGDVGKGCAQSLSKMGARVLVTEIDPINALQACMDGYQ---------------IVTMETAAPLSNIFVTTTGCRDI--VRGEHFAVMKEDAIVCNIGHFCEIDVAWLNANAKKDTVKPQVDRYTLANGVHIILLAEGRLVNLGCGT.... 160
13 -10.500PF02254.18; Q92CZ9_LISMO/5-120; TrkA-N domain  ali follow..  12  1.FAVIGLGRFGGSICRSLVEQGMEVLAIDSDEERVNEYMSNSTDENALRQLGIRNFEHVIVAIGEDIQSSILTTLILKEMGVKYVTAKATN................................................................. 98
14 -10.400PF00056.23; MDH_CHLAA/3-142; lactate/malate dehydrogenase, NAD binding domain  ali follow..  18  2KISIIGAGFVGSTTAHWLAAKELGDIVLLDFVE--GVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTS-ADITRACISQAAPL-SPNAVIIMVNNPLDAMTYLAAEV........................................ 130
15 -9.790PF01262.21; Q9S227_STRCO/141-353; Alanine dehydrogenase/PNT, C-terminal domain  ali follow..  10  30RAVVIGGGVSGWNAAQIAIGLGFHVTLLDKDITKLREADKIFGT-------KIQTVVSNAFELEKACLEADLVIGAVGAKAPKLVTNELVSRMKPGSVLVDIAQGGCFEDSHPTTHAEPTFPVHNSVFYCVANMPGAVPNTSTYALT......... 174
16 -9.580PF16924.5; D3E6N7_GEOS4/7-123; Dipicolinate synthase subunit A N-terminal domain  ali follow..  1.TVFVGGDARQIEVIRKCAEMDASVMIAGFEKLQDSF-----------------QGVTREPLTPELLSDADALILPVVGCDDEGRVSA-GPLRLQEEHIAAMPGHGVIYTGMAKPYLRSLCDKYKIKLVE.......................... 115
17 -9.250PF01408.22; YEAH_SCHPO/36-187; Oxidoreductase family, NAD-binding Rossmann fold  ali follow..  16  2KCAIFGCGGINQKLELVLGHRLQVVALLSPHKSSHERVLKQKAETEYASSYANTREFYSADEYLEYLDKPDAYIIGIPPETHGSTQKGADLELAILKR-LFIEKPISAAPVEDAFAVARRLPSESVISVG.......................... 151
18 -9.200PF01118.24; DHAS_YEAST/6-132; Semialdehyde dehydrogenase, NAD binding domain  ali follow..  12  2.AGVLGAGSVGQRFILLLANHPH-KVLGASSRSAGKKYVDAVNWKQTDLLPESATDIIVSECKSEFFKECDIVFSGLDADYAGAIEKEF---MEAGIAIVSNAKNYRREQDVVPVVNPEHL................................... 124
19 -9.150PF13460.6; G2TRC2_BACCO/7-191; NAD(P)H-binding  ali follow..  14  2.....ANGKIGKILVDLLQKSDRHIRAMVRKEEQAQFFRQKGVDA-------VLSDLEGTDELAEAAKGCDIVFTAGSG............................................................................. 68

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.