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Query: PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst VEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLKLast
1 -87.100PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin  ali  100  1VEALLAIYPEGHKRGAMIPLLDLAQRQSGGWLPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNAPMIQVNDDYYEDLSVEDTKEIISKLK 148
2 -17.400PF07845.11; K9UG38_CHAP6/7-125; Protein of unknown function (DUF1636 topsan)  ali follow..  18  1......................................................................IFVCQSREVGNSGGYLLHQELTTQLA----TNPLAEDFEVKPVKCMGACNRPCVVAFAAALFGDLDRTALAEVSQSI. 86
3 -9.880PF07293.11; E6U2D7_BACCJ/1-75; Protein of unknown function (DUF1450 topsan)  ali follow..  20  2...................................................................KPIIEFCVS--NIVSGTKAVKEELEKDPNLD-----------VIEYGCLSYCGQCKFALVNGELVSGETNEELLANIYT.. 70
4 -7.270PF09948.9; B4EK64_BURCJ/68-260; Predicted metal-binding integral membrane protein (DUF2182 topsan)  ali follow..  11  66...............................LQPAGLISAMMLWSKSARLSAIVLALAGLYQFSPLKRACLRQCRAPAAFLVAHWRPGVAGSFLLGVRHG------------IVCVGCCWLLMALLF..................... 149
5 -6.660PF14297.6; A8EVI4_ARCB4/39-124; Domain of unknown function (DUF4373 topsan)  ali follow..  16  14CMILIEQLGCEG--GIFWILVETLREQKDYRYPFYLLSALARKYNTTQAKVETVVKEYGLFEIDIDS................................................................................. 79
6 -5.940PF09995.9; Q0SDE6_RHOJR/44-278; Uncharacterized protein conserved in bacteria (DUF2236 topsan)  ali follow..  16........................................SGTLQVMHPVIDTALVQHSAVFGNEFARLARSAGPIIRALYDPTGAEAQMIRDMHKDIKGTTDEGRRYHALNPGPAHATFLGTQYVVAEYFGEPLGDSEKEQLYQESK 126
7 -5.890PF06061.11; Q8B9C3_NPVR1/111-440; Baculoviridae ME53  ali follow..  1........................RDLRMHFMSDLERDIMKATLKFSTNYILGYINSKDMRMTGKFASRPVKHMSDSRCTTCNYKFKDNTREWFLYVVVHIEKPLDDPGRIDICCQKCYLYHNVPKTSYEIYPSINLVDLSYLAR... 121
8 -5.890PF00990.21; Q55955_SYNY3/706-867; Diguanylate cyclase, GGDEF domain  ali follow..  14  17.QALEREWQIAFRETESLTLVKLYNDTLGHQAGDHCLRIVAAILQESVHRTSDLVARYG-------GEEFALILPRTD--LSGAVIVAQRIKDAKAISHPTSEIANYVTVS----IGIHCAVPRPGLSLASWVKCADDALYQAKKRGR 160
9 -5.790PF16269.5; R5ZU64_9BACT/616-824; Domain of unknown function (DUF4922 topsan)  ali follow..  89................................ACPAFVIQGPASNDVPLLLQKLMSVLPVASGTSEPDINILSWRQEGTPNTPDHIVFVRKKHRPNCYFADGDAQILVSPGAIDMGGL-----IITPREEDFEKMTAHIATSILREV. 201
10 -5.770PF06703.11; J0LIX6_AURST/54-225; Microsomal signal peptidase 25 kDa subunit (SPC25)  ali follow..  13  3.............KIACDDALKRFLAQPGAFKMINLHTDVRLVLGWSSVIVAGLTGLYGWKVEFEKSKAAVAAGVILYMILSSVQTLYAYFIEQNIVFEGKRKTLQRRIETERITLRSRTIPSTPSTPPKYELDVSYVHSTN...... 131

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 5 9 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.