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current user: public |
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| Query: PF01345.18; Q9RWI2_DEIRA/209-325; Domain of unknown function DUF11 topsan, from PfamA32U |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . | |||||||
| # | Score | Template | Links and tools | %id | First | LQKTFTPAEVRAGGETTVNLTLTNNGGDSREAVLTDLLNTPELRDFVFVSGSARLGGNARDAVIEYTADGSSWNTVQPPNVAGIRVRTSSVPAGGSLQLSFTLRAPRVTATTRRNVA | Last |
| 1 | -69.000 | PF01345.18; Q9RWI2_DEIRA/209-325; Domain of unknown function DUF11 topsan | ali | 100 | 1 | LQKTFTPAEVRAGGETTVNLTLTNNGGDSREAVLTDLLNTPELRDFVFVSGSARLGGNARDAVIEYTADGSSWNTVQPPNVAGIRVRTSSVPAGGSLQLSFTLRAPRVTATTRRNVA | 117 |
| 2 | -24.800 | PF03504.13; OMCBD_CHLTR/92-182; Chlamydia cysteine-rich outer membrane protein 6 | ali follow.. | 10 | 14 | ITQAVPEY---ATVGSPYPIEITATGKRDCVDVI---ITQQLPCEAEFVRSDPA---------------------TTPTADGKLVWKIDRLGQGEKSKITVWVK............. | 90 |
| 3 | -22.900 | PF05753.14; Q9VUZ0_DROME/9-186; Translocon-associated protein beta (TRAPB) | ali follow.. | 15 | 22 | VSKQILNKYLVEKSDLLVRYTIFNVGSGAATKVLVDSGFH--PEAFDVVGGQPT-------------------------------AVVDRIAPQTNFTHVLVVRPKA--FGYFNFTA | 104 |
| 4 | -21.400 | PF05737.12; Q8YAG6_LISMO/186-312; Collagen binding domain | ali follow.. | 13 | 4 | LYKYGWADAENP-ELIQWVVRVNYSKQNIQNAVYEDFIGP----KQVVDFNSIKAFHGEFDPDDNFTPGAEVPSSAITQTTDGFKVDLGNL--TDSVKISYYTTSTDNGASNYTNKG | 114 |
| 5 | -20.200 | PF16569.5; R6NK55_9FIRM/188-305; Gram-positive pilin backbone subunit 2, Cna-B-like domain | ali follow.. | 14 | 1 | ...........IGDNVPFQLTGTVDAKYDKYGSYYYAFHDTMSDGLTFNADSVTVTVDGTA-----VTTGYEVVTEDLDDGCTFEVRFADLKAGSKVVVNYTAKLNENAEGGNTNVS | 110 |
| 6 | -17.900 | PF10633.9; Q67M97_SYMTH/263-339; NPCBM-associated, NEW3 domain of alpha-galactosidase | ali follow.. | 13 | 1 | .........AVAGRKNGVTLEVKNTGTTEITGI---NFASTLPPNWTATFSPDS---------------------------------IDALAPGESRQVTVEVTPNSKAL....... | 65 |
| 7 | -11.700 | PF17998.1; D4BSB5_BIFBR/1200-1377; Cell surface antigen I/II C2 terminal domain | ali follow.. | 11 | 16 | ..VSIDGKTMLLGDTGNYVVTLDLKQTNNAYRVWKAGITDDFDDEHLAIDGTLDSKGQDVTGKFNIQIKDGVAYVYAKTVDTWIPKKIDQNLLGQEYRIVMPYKVVKVEDGTVRNKA | 164 |
| 8 | -11.600 | PF16364.5; Q8G499_BIFLO/1200-1370; Cell surface antigen C-terminus | ali follow.. | 11 | 12 | .GDSIDGKSVYLNHTFLYRLDSSILPPDRAYQTVTDGGTDQLNTEYDQYLGNWAVGEKIAGSGFDSSKFGGNLFTVDADDNGKVTADATQ-DNEHEAGWVLYLQCKRIAVAEVPNTW | 152 |
| 9 | -9.490 | PF17973.1; R7CV17_9BACE/1739-1864; Bacterial Alpha-2-macroglobulin MG10 domain | ali follow.. | 7 | 20 | WQEVKSGDVLNVGDRVLSRLQVTADRDLD-------QIEDKQAACMEPGVVLSSYRWDNGMGYYRVVKDA------------SVRYFADTFRKG-VHTFDMEYTLTAP......... | 109 |
| 10 | -9.400 | PF06030.12; Q8Y9H6_LISMO/31-150; Bacterial protein of unknown function (DUF916 topsan) | ali follow.. | 5 | 21 | ........QMNPKQKQTLKVEITNHSKEEITVNCVANTAVTNEMGVDYSIPNTKPDKTLKYPFADIVKESVSE----------------TLKPNETKIWTAAIQMPAEN........ | 107 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26; |