current user: public
If you have questions about the server, please let us know.

Query: PF01385.19; P73816_SYNY3/165-279; Probable transposase, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst SFVVEVDPQQLADNGQSVGIDLGIIDFATLSTGEKIKSPKPLKAKLKRLRKCQRNLARKQKGSKRREKARLRVAKVHAKVKDTRTDFLHKLSTRLIRENQTVILEDLNTAGMMKNLast
1 -78.200PF01385.19; P73816_SYNY3/165-279; Probable transposase  ali  100  1SFVVEVDPQQLADNGQSVGIDLGIIDFATLSTGEKIKSPKPLKAKLKRLRKCQRNLARKQKGSKRREKARLRVAKVHAKVKDTRTDFLHKLSTRLIRENQTVILEDLNTAGMMKN 115
2 -23.400PF18516.1; D7JGI7_9BACT/839-1259; RuvC nuclease domain  ali follow..  16  8NQLVKRHIRS-ATDLHIIGIDRGERHLLYLTEQFSLNEIVNEYNGNTYRTDYHELLDTREGERTEARRNWQTIQNIRELKEGYLSQVIHKISELAIKYNAVIVLEDLNFGFMRSR 130
3 -6.470PF10252.9; B2AKR9_PODAN/94-186; Casein kinase substrate phosphoprotein PP28  ali follow..  20  35.....................................................SAPNKKEREAIAAQEAKERYMKLHEKTDQAKADL............................ 70
4 -6.450PF00170.21; CREBA_DROME/439-502; bZIP transcription factor  ali follow..  15  1.............................................EKSLKKIRRKIKNKISAQESRRKKKEYMDQLERRVEILVTE-----NHDYKKRLEGLEETNANLLSQLH. 64
5 -6.260PF14839.6; M3XIP4_LATCH/26-228; DOR family  ali follow..  17  151...........................................EKVSHIRHIQRAKLRVEK-TKSHFQRQNLARECRPRRAKHQGSFVYQPCQR..................... 203
6 -6.030PF15764.5; G1MHT5_AILME/114-399; Domain of unknown function (DUF4693 topsan)  ali follow..  12  47........................EAFTLKEKGTLLKLPMAYRKAASQNSRCLCVHSSLWA-----QLSSTRTSDCGDAATTAKTQFLQKMKMTSGSPGSGLSAAQVE....... 125
7 -5.930PF03131.17; Q6IRI7_RAT/24-115; bZIP Maf transcription factor  ali follow..  19  23..........................................KEEVTRLKQRRRTLKNRGYAASCRIKRVTQKEELERQRVELQQE-----VEKLARENSSMRLELDALRSKYE. 89
8 -5.900PF17306.2; E7LUS7_YEASV/70-397; Family of unknown function (DUF5355 topsan)  ali follow..  12  164...LSINQYNIDECGIAIGLQESIKKLLNIVPNSQLKELDILSSTDITKKRDLIKMSFKRKIHGSTLKNQRIFEKLKSSLDDFVIPLTILLRYRYQTTNENYSFKTV........ 281
9 -5.820PF03317.13; T1M0X4_TRIUA/1-123; ELF protein  ali follow..  15  13.....................................................................RLKLFLMEEKLSSMRQDVIQEFVALYQRVGPYLSIEPYLVDEALCS 58
10 -5.800PF09785.9; E3QCV0_COLGM/394-549; Prp31 C terminal domain  ali follow..  22  14........................................................PSRKRGGRRARKAKEATAMTELRKAQNRMVF............................ 44
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.