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Query: PF01387.17; F7GY62_CALJA/1-131; Synuclein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGNIAAATGFVKKDHLGKSEEGAPQEGILEDMPVDPDNEAYEMPSEELast
1 -46.200PF01387.17; F7GY62_CALJA/1-131; Synuclein  ali  100  1MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGNIAAATGFVKKDHLGKSEEGAPQEGILEDMPVDPDNEAYEMPSEE 131
2 -23.400PF11098.8; A1BIR5_CHLPD/1-139; Chlorosome envelope protein C  ali follow..  10  15........LDFTDRLTFLAESVLMTGQGAVVGGLELAGSVVETVAGTVGSLIDAMLGRTGGVVGETIDRVAITVKDVSRSAGELYSDAVKNVDNVTDNAARAIGDAGVSASEAVRNIAGSFQKTTVK.... 138
3 -21.100PF17258.2; A0A059W5U3_STRA9/1-224; Family of unknown function (DUF5324 topsan)  ali follow..  17  2.........TRKDSVRAATHSAKDGVRHAAEVVAPYAGTAKDAAVHYSQEARTRLAPRVAEAAQQARAQYDTHLSPRIEHARGALPPKVDAAASAALRTLQAARQAADYTTPRLENAVVNARAAAEPVREE 124
4 -20.100PF01442.18; L9KQJ6_TUPCH/68-256; Apolipoprotein A1/A4/E domain  ali follow..  7  6WDTLGSTFQKVHEHLGPVAQEFWEKLEKETEELRREINKDLEDVRQKTQPFLDEIQKKWQEDLERYRQKVEPLSAQLREGARQKLMELQEQVTPLGEDLRDSVRAYADTLRTQLAPYSEQMRKTLGARLEA 136
5 -13.500PF15984.5; Q8XQX4_RALSO/108-304; Bacterial collagen, middle region  ali follow..  9  62VTSAGTLVGGLGTGQLSPLAPVTTPLAGALTQVGQAVTNAGTTLGTTLSTGVEQLTQQLSTAIVPLTSQIIGGTQTVGAGMGTPANSLLGTLGGAIANGGSTLTNANVPVVSNVGGVVGAVGNTVASLG.. 193
6 -12.600PF05957.13; Q9HZG8_PSEAE/12-109; Bacterial protein of unknown function (DUF883 topsan)  ali follow..  13  1........DELLAEFQALVADTEKLLQSTADVAGDQAEEIRGKIHDSLKRARDTLRDTKDSLKDNVRERSQAAVDATEVYVGE................................................ 75
7 -10.700PF10151.9; B4G6Y3_DROPE/2-673; TMEM214, C-terminal, caspase 4 activator  ali follow..  3  536LPHVQRAWYVTMGASARGYKWAEEHVPPYAEPAIKTSVDLWKLARNAAYNIIQSGKGYFNTKWPVLAKFIDQYVPNLSSKLEAFVSGACDLANNSYEKSAALIKEKI--SPENINQALNQTRNVALE.... 665
8 -9.480PF12732.7; F8EDB6_RUNSL/8-87; YtxH-like protein  ali follow..  12  19..............APEKGTEIRDKVRETANGFASDLLDALQRGRQQYTDIKDNVEDKAKELKSKADEKITEVKDR....................................................... 80
9 -9.460PF07464.11; A0A212FM78_DANPL/32-181; Apolipophorin-III precursor (apoLp-III)  ali follow..  13  28NKVLKEGSESVLSQISALSGSLQSALKEANGKAKEALEQAQANLQRTAED-LRKSHPEVEQQANALKAKLQDAVSKTVSETQKLVKEVSANIEQTNQKLTPKIKEAYDDFVKQAEDVQKKLHEA....... 150
10 -9.450PF09602.10; N0AZL4_9BACI/10-168; Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)  ali follow..  7  5MDVFWDGWFNSFKTFHSLQNGVEEQSLQVIETQKDWIKSTGEQLSRLEEDTKKLTSDWLGNLQSTLNKAQSEFGGQNILEWTDKLEEIGFKSDISDFSPSKAFTDMLSKSHSHLEETLKSAFDQQQKNRTE 135
11 -9.020PF06911.12; K1WUX6_MARBU/259-437; Senescence-associated protein  ali follow..  9  45.PTTHTRLRKVHTFSEGAAGLSAKTVGQVSKYAQNLGASLVNRGEKANHRGIGPDGKPVSGYKPGLLNKSLMAFSTIADGVDQAGRNLLASTSTAATTVVT--HKYGAEAGEVTKNIGGGVKN........ 164
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.