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Query: PF01456.17; Q9NIQ2_TRYCR/1-128; Mucin-like glycoprotein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MLRPVLCVLFFALCCACVCATAQEEGQYDAADVEAGDGPDKTTTTTTTTTTTTTTTTTTTTTNAPAKSTTTTNAPAKSTTTTNAPAKNTTASKAPTPGDGSSLGGPLWVQVPLLLLVIAAVATAGAACLast
1 -105.000PF01456.17; Q9NIQ2_TRYCR/1-128; Mucin-like glycoprotein  ali  100  1MLRPVLCVLFFALCCACVCATAQEEGQYDAADVEAGDGPDKTTTTTTTTTTTTTTTTTTTTTNAPAKSTTTTNAPAKSTTTTNAPAKNTTASKAPTPGDGSSLGGPLWVQVPLLLLVIAAVATAGAAC 128
2 -9.150PF12273.8; K1X614_MARBU/45-169; Chitin synthesis regulation, resistance to Congo red  ali follow..  4ALILVVIFFLLMGYLFSITRRRRQRGLYGTGWIPGTGPKPPQGQWADGRNGGPSHYVAPPPPYMGNQATGTTFNSNDGYYGGHANQAGGAGIELQQPQSSYQ.......................... 108
3 -8.620PF15102.6; TM154_HUMAN/24-165; TMEM154 protein family  ali follow..  21  2.......................EELENSGDTTVESERPNKVTIPSTFAAVTIKETLNANINSTNFAPDENQLE--------------------------------LMVLIPLILLVLLLLSVVFLA. 75
4 -8.320PF11321.8; C5X9Z4_SORBI/68-189; Protein of unknown function (DUF3123 topsan)  ali follow..  12  17.......VLWLRAVVESAADEDDADGCLRVAYDYTNGKFPRVARVSPNDVKLHVVPPADDASGTAASSTGSSTVTSDHSARTSSSSQQDKAAPPPRST-GKKL......................... 113
5 -8.150PF15826.5; M3Y0R3_MUSPF/8-201; Bcl-2-binding component 3, p53 upregulated modulator of apoptosis  ali follow..  12  1...................ARARQEGSSPEPVEGLSRDGPRPFPLSRLVPSAVSCGLWESDCSPRVAAHGLFRAGAAAVSQPPPPPVWVSLTSQRTIVGGSV.......................... 83
6 -8.120PF10169.9; E2AZZ5_CAMFO/3-131; Learning-associated protein  ali follow..  21.....................VKELDRLKKTLGIENAPKDVEMADIQEIATVVDAKKIKEEQAKAKDTKSDAITDQEQMEVEKIENARVYNKKTLRDQYGN----PVWMN.................. 106
7 -8.080PF05283.11; F6ZX51_ORNAN/2-123; Multi-glycosylated core protein 24 (MGC-24), sialomucin  ali follow..  16  1.....ICTG----CSACLGPSVGNSS----CFWLECSGKSYCSDSPSVENCTAENKTEDCSAATTTRPSPTSSSVTTQTTPNATATPVTPSPRKSSFDAASFIGG--------IVLVLGVQAVV.... 105
8 -7.770PF07421.11; G3W144_SARHA/7-169; Neurotensin/neuromedin N precursor  ali follow..  20  2...PLVCMMFLAFTSQSLCSDSEEE---------------MKALEADLLTNMYTSKINKARFP................................................................. 46
9 -7.590PF15715.5; M3ZWV8_XIPMA/1-117; PCNA-associated factor histone like domain  ali follow..  24  3.......................................................RTKADSVPASYRKAVAASAPRKSLGSSLANASSSSSGHSSTLAKNKYAGGPTW-QKGI............... 67
10 -7.510PF06129.12; Q6TUW2_YMTV5/4-111; Chordopoxvirus G3 protein  ali follow..  13  6.......LFFIVFIIIAYCINYYPTNKLQMAVKNL-NYEYEVRKQQDTNFPQKLNTIIFSDKEEFISDNVRAYYNASTGTVAVLTSSKKLLFNVNFDDDVSAL-------LPILLL............ 106

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.