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Query: PF01789.16; Q11A16_TRIEI/25-179; PsbP, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GGLQSFVDTTDGYEFLYPNGWIEVKVSDGPDVVFHDLVEATENVSVVISPMVEEKTLSDLGTPTDVGYRLSKNAIAPKDSGREAELVNAEAREYKTKTYYKLEYAVKLADGRERHNLASVAVSRGKLFTINISTTEKRWEKVNDKFQQVINSFSVLast
1 -77.200PF01789.16; Q11A16_TRIEI/25-179; PsbP  ali  100  1GGLQSFVDTTDGYEFLYPNGWIEVKVSDGPDVVFHDLVEATENVSVVISPMVEEKTLSDLGTPTDVGYRLSKNAIAPKDSGREAELVNAEAREYKTKTYYKLEYAVKLADGRERHNLASVAVSRGKLFTINISTTEKRWEKVNDKFQQVINSFSV 155
2 -41.600PF16304.5; Q4KB86_PSEF5/24-175; Domain of unknown function (DUF4946 topsan)  ali follow..  1...........EPQVTWPQGWTVEPLPAPEGVKSDTAGNPLMVMELTMTQVDSGHVVNLQGVLLEMRKSVQKDF---AQGGYQSVCNKIHAAQLSRLEALETTCTITQNGRHVLSQTLVAALNGDKAYVLSYAGQAAAFAESQDEILAVRNGLKL 152
3 -35.000PF08786.11; D8MWY2_ERWBE/12-140; DcrB  ali follow..  14  2............GQLDLPPGYE-----DRTLNVFKPLDPAGAVITIARDALNEGEMLGAY---------IDRQLQQLNQVLKGWKLESRQPATLGALPGESIHASYLREGKRIAQQQAVFAVDDRLVLVITQSKTAVLDNGDMATFSSLLES... 129
4 -32.800PF10738.9; O53780_MYCTU/57-227; Probable lipoprotein LpqN  ali follow..  12  23......DPGSPTIDLPVPDDWRLLPESSRAPIVYTQPADPNDPPTIVAI-------LSKLTGDIDPAKVLQFAPGELKNLPGFQGSGDGSAATLGGFSAWQLGGSYSKNGKLRTVAQKTVVISQGAVFVLNADALDDETMTLMDAANVIDEQTTI 170
5 -16.000PF12712.7; D6D4X1_9BACE/4-154; Domain of unknown function (DUF3805 topsan)  ali follow..  13  1...KKFISPGAWFSMNYPSDWNEFEDGEGS-FLFYNPEVWTGNFRISAFKGKAGYG------KDVIRQELKENDSASLVKVGTWECAYSKEMFQEEGTYYTSHL---------------ITGVDDIAFECSFTVPKGGVVKEAEDVIATLEVRK. 130
6 -11.200PF16142.5; Y291_PASMU/52-230; Domain of unknown function (DUF4850 topsan)  ali follow..  45.........PFEKMILVPKNWQLLNGVNGSISYVFTPKTGKGYLSYYHAGACVGCAMISASAFFPEAQKDAKEHDFEAYTATVPPLSQVRLKP------HLMAYQVNKGKDKLDGVAYYNLENDGPFWKAEVFLPESQQKLATPLLN........ 179
7 -8.640PF18426.1; E1T3Y5_BURSG/141-307; Tle cognate immunity protein 4 C-terminal domain  ali follow..  14  4........SQSGFCL--KDGFIADDGKEEAGITFKFPQWPGVLVSVNSSTVTKLGE-----PKLLERMAKAPIPDAYKSLMNSIHDIRKGTRVAAGREGEEILSTVPTDGGYRLHQFQWEAQGSKITLTVEFESGMTR-EEAVRLFDAVVNSIRL 164
8 -8.200PF18443.1; A0A0Q4NM25_9GAMM/45-202; Tle cognate immunity protein 4 N-terminal domain  ali follow..  13  8............YIFDVPSFFVNTQHSAVMINEYRLGTQRMYLPAFEQMIRLREDELKKTEAIDP----------------RDRPFLKKSIVLSDELNGVIFDRNEGVSIPGYGRTLEAYLYHGGVAFTITKKFDDLSDEKYQDKAEYLKAGVS. 134
9 -8.200PF16125.5; R5BIZ5_9BACE/29-321; Domain of unknown function (DUF4837 topsan)  ali follow..  141........ARFGGAMHFPSGYKLKLAKDDFMWIADDKQYVYQDVFIYRYPAEKNHPFTS--RNEMLKKYVPGMFENTYMTTSEFFTPQIEYMRYRGIHFVQTRGMWEVKNGGPFVSHSFYTPDGKDIMVLFVYAPRYDKRQYLRQVESLLYS... 293
10 -7.680PF01728.19; Q7QB53_ANOGA/52-237; FtsJ-like methyltransferase  ali follow..  5SAFK-LLEIDSKYGLASPGSWTQIAVKQSNADGGLPGKPKGMVVGVDLLQIYPIEHAILFGNSDFLRKETQDKIRASLGERRVDCVLSDMAPNASGIRALD-QENITTLCYAVLRFAILMSTPNASLLMKVWDN--GDVPKLEKSILEYYKTVKR 166

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.