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current user: public |
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Query: PF01789.16; Q11A16_TRIEI/25-179; PsbP, from PfamA32U |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . | |||||||
# | Score | Template | Links and tools | %id | First | GGLQSFVDTTDGYEFLYPNGWIEVKVSDGPDVVFHDLVEATENVSVVISPMVEEKTLSDLGTPTDVGYRLSKNAIAPKDSGREAELVNAEAREYKTKTYYKLEYAVKLADGRERHNLASVAVSRGKLFTINISTTEKRWEKVNDKFQQVINSFSV | Last |
1 | -77.200 | PF01789.16; Q11A16_TRIEI/25-179; PsbP | ali | 100 | 1 | GGLQSFVDTTDGYEFLYPNGWIEVKVSDGPDVVFHDLVEATENVSVVISPMVEEKTLSDLGTPTDVGYRLSKNAIAPKDSGREAELVNAEAREYKTKTYYKLEYAVKLADGRERHNLASVAVSRGKLFTINISTTEKRWEKVNDKFQQVINSFSV | 155 |
2 | -41.600 | PF16304.5; Q4KB86_PSEF5/24-175; Domain of unknown function (DUF4946 topsan) | ali follow.. | 9 | 1 | ...........EPQVTWPQGWTVEPLPAPEGVKSDTAGNPLMVMELTMTQVDSGHVVNLQGVLLEMRKSVQKDF---AQGGYQSVCNKIHAAQLSRLEALETTCTITQNGRHVLSQTLVAALNGDKAYVLSYAGQAAAFAESQDEILAVRNGLKL | 152 |
3 | -35.000 | PF08786.11; D8MWY2_ERWBE/12-140; DcrB | ali follow.. | 14 | 2 | ............GQLDLPPGYE-----DRTLNVFKPLDPAGAVITIARDALNEGEMLGAY---------IDRQLQQLNQVLKGWKLESRQPATLGALPGESIHASYLREGKRIAQQQAVFAVDDRLVLVITQSKTAVLDNGDMATFSSLLES... | 129 |
4 | -32.800 | PF10738.9; O53780_MYCTU/57-227; Probable lipoprotein LpqN | ali follow.. | 12 | 23 | ......DPGSPTIDLPVPDDWRLLPESSRAPIVYTQPADPNDPPTIVAI-------LSKLTGDIDPAKVLQFAPGELKNLPGFQGSGDGSAATLGGFSAWQLGGSYSKNGKLRTVAQKTVVISQGAVFVLNADALDDETMTLMDAANVIDEQTTI | 170 |
5 | -16.000 | PF12712.7; D6D4X1_9BACE/4-154; Domain of unknown function (DUF3805 topsan) | ali follow.. | 13 | 1 | ...KKFISPGAWFSMNYPSDWNEFEDGEGS-FLFYNPEVWTGNFRISAFKGKAGYG------KDVIRQELKENDSASLVKVGTWECAYSKEMFQEEGTYYTSHL---------------ITGVDDIAFECSFTVPKGGVVKEAEDVIATLEVRK. | 130 |
6 | -11.200 | PF16142.5; Y291_PASMU/52-230; Domain of unknown function (DUF4850 topsan) | ali follow.. | 8 | 45 | .........PFEKMILVPKNWQLLNGVNGSISYVFTPKTGKGYLSYYHAGACVGCAMISASAFFPEAQKDAKEHDFEAYTATVPPLSQVRLKP------HLMAYQVNKGKDKLDGVAYYNLENDGPFWKAEVFLPESQQKLATPLLN........ | 179 |
7 | -8.640 | PF18426.1; E1T3Y5_BURSG/141-307; Tle cognate immunity protein 4 C-terminal domain | ali follow.. | 14 | 4 | ........SQSGFCL--KDGFIADDGKEEAGITFKFPQWPGVLVSVNSSTVTKLGE-----PKLLERMAKAPIPDAYKSLMNSIHDIRKGTRVAAGREGEEILSTVPTDGGYRLHQFQWEAQGSKITLTVEFESGMTR-EEAVRLFDAVVNSIRL | 164 |
8 | -8.200 | PF18443.1; A0A0Q4NM25_9GAMM/45-202; Tle cognate immunity protein 4 N-terminal domain | ali follow.. | 13 | 8 | ............YIFDVPSFFVNTQHSAVMINEYRLGTQRMYLPAFEQMIRLREDELKKTEAIDP----------------RDRPFLKKSIVLSDELNGVIFDRNEGVSIPGYGRTLEAYLYHGGVAFTITKKFDDLSDEKYQDKAEYLKAGVS. | 134 |
9 | -8.200 | PF16125.5; R5BIZ5_9BACE/29-321; Domain of unknown function (DUF4837 topsan) | ali follow.. | 8 | 141 | ........ARFGGAMHFPSGYKLKLAKDDFMWIADDKQYVYQDVFIYRYPAEKNHPFTS--RNEMLKKYVPGMFENTYMTTSEFFTPQIEYMRYRGIHFVQTRGMWEVKNGGPFVSHSFYTPDGKDIMVLFVYAPRYDKRQYLRQVESLLYS... | 293 |
10 | -7.680 | PF01728.19; Q7QB53_ANOGA/52-237; FtsJ-like methyltransferase | ali follow.. | 7 | 5 | SAFK-LLEIDSKYGLASPGSWTQIAVKQSNADGGLPGKPKGMVVGVDLLQIYPIEHAILFGNSDFLRKETQDKIRASLGERRVDCVLSDMAPNASGIRALD-QENITTLCYAVLRFAILMSTPNASLLMKVWDN--GDVPKLEKSILEYYKTVKR | 166 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |