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Query: PF01810.18; RHTC_ECOLI/13-206; LysE type translocator, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IVALMSPGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAPAPQVELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVETLAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISRLast
1 -90.300PF01810.18; RHTC_ECOLI/13-206; LysE type translocator  ali  100  1IVALMSPGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAPAPQVELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVETLAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISR 194
2 -20.200PF11139.8; A0QQE7_MYCS2/12-220; Sap, sulfolipid-1-addressing protein  ali follow..  14  6MVVALSPLSIIPAVLVLQTPRPRPTGLAFLGGWLVGMAALTALFIEVSNLF-DKPPVWASWLRIVLGTALIIFGVYRWLNRSKAAHTPKWMQSMGKLTPPRAGVTGVVLTIVNPKVLFICAAAGLAIGSAGLGQPQVWAAAIWFVVFASSTVALLAYAVSGSKLDPTLARLGEWMERLVAVILVVIGLLVL... 204
3 -13.900PF01914.17; YCHE_ECOLI/8-210; MarC family integral membrane protein  ali follow..  16  11LFALVNPGIIPVFISMTSYQTAAARNKTNLTANLSVAIILWISLFLG-DTILQLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGP-------AISSTIVWGTRYHSISYLFGFFVAIALFALCCWGLFRMAPWLVRVLRQTGINVITRIMGLLLMALGIEFIVT. 197
4 -11.300PF05758.12; TI214_VITVI/21-949; Ycf1  ali follow..  12  11FLTTFSIGPSYLFLLRAQVEEGTEKKVSAITGFITGQLMMFISIYYAPLHLALGRPHTITVLAL----YLLFHFFWN-NHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLLNH--FILPSSMLARLVN-NNKMLFVTSSFVGWLIGHILFMKWVGLVLVWIRQKYLVSELRNSMARIFSILLFITCVYYL... 217
5 -10.400PF03596.13; Q9JXN6_NEIMB/16-206; Cadmium resistance transporter  ali follow..  13  10..........IILMLFFAKRKSRKDIINIYLGQFLGSVSLILLSLLFAFVLDYIPSKEI--LGLLGLI--ILLGIKVLLLGDSDGEAIAKEGLRKDNKNLIFLVAMITFASCGADNIGVFVPYFT-----TLNLANLIVALLTFLVMIYLLVFSAQKLAQVPSVGETLEKYSRWF---VAVVYLGLGIYILVEN 182
6 -9.930PF02683.15; O66942_AQUAE/8-266; Cytochrome C biogenesis protein transmembrane region  ali follow..  13  6LLSFLSP-PAYLSYIETQKGKVNWKVFFSALYFVLGFTLVFTGLGASATFVGQLLHDYQEWIIRVGSGLVIFFGLHFAVKAHEFLYRQLKIEAKAEISYLGAFLMGVVFAFGSPCIGPVLGSILFLASQQETVAKGALLLFVYSIGLGIPFLLAGLLFSLFLNFVRSFSRYFKYVEIAGGVLLVSLGLLLAL.. 259
7 -8.040PF02659.15; MNTP_SHIDS/30-182; Putative manganese efflux pump  ali follow..  10  7.............ALRTGLIFGAVETLTPLIGWGMGMLASRFVLEWN---------------HWIAFVLLIFLGGRMIIEGFRGAD-DEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFLQVNII---------------ATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQIL... 153
8 -7.450PF15029.6; H0VXD9_CAVPO/9-242; Transmembrane protein 174  ali follow..  17  7.VFSLTPYTP----ADIQVSDDDKAGATLLFGIFLG-LVGITFTVMG-VSHFEWTQLLGPILLSVGVTFILIAVCKFMLSCQLCKESEERVPDSEQTSGGQSF---VFTGINQP--ITFHGATVVQYIPPPYGSQEP......................................................... 141
9 -7.300PF03741.16; Q8EG61_SHEON/77-283; Integral membrane protein TerC family  ali follow..  13  18..........IALIFSSLGIPRLYQHRVLFWGIMGVIVLRAIMIGLGAALVAQ-----YQGVLVLFGLFLIFTGIKMLFSNDEHGDIQTPSLHQEKFWVRGEDHQLSKGWWATPLFLALILVETADLVFAVDSIPAIFAITQDPFIVYTSNIFAILGLRALYFALAAMVHRFEYLKYALSVVLVFIGVKVG... 207
10 -6.960PF00493.23; MCM2_YEAST/480-703; MCM P-loop domain  ali follow..  14  60VLLLGDPGTAKSQILKYVEKTAHRAVFATGQG----------ASAVGLTASVRKDPITKEWTLEGGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLQARCSIIAAA........................................................................ 171
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.