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Query: PF01856.17; O26005_HELPY/59-248; Helicobacter outer membrane protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GFEVGYKQFFGKKKWFGMRYYGFFDYAHNRFGVMKKGIPVGDSGFIYNSFSFGGNTLTERDSYQGQYYVNLFTYGVGLDTLWNFVNKENMVFGFVVGIQLAGDSWATSISKEIAHYAKHHSNSSYSPANFQFLWKFGVRTHIAKHNSLELGIKVPTITHQLFSLTNEKGYTLQADVRRVYAFQISYLRDFLast
1 -91.100PF01856.17; O26005_HELPY/59-248; Helicobacter outer membrane protein  ali  100  1GFEVGYKQFFGKKKWFGMRYYGFFDYAHNRFGVMKKGIPVGDSGFIYNSFSFGGNTLTERDSYQGQYYVNLFTYGVGLDTLWNFVNKENMVFGFVVGIQLAGDSWATSISKEIAHYAKHHSNSSYSPANFQFLWKFGVRTHIAKHNSLELGIKVPTITHQLFSLTNEKGYTLQADVRRVYAFQISYLRDF 190
2 -18.600PF16961.5; Q5LG58_BACFN/59-257; Putative OmpA-OmpF-like porin family  ali follow..  15  18GFEGGW--FFKDQ--WKLNLGGGVSFTNNPGYPAVPGTIDDSNKNN-----SADENMGEIPNYRAVADAQSFAYNVSAGVDRYFNIKRVPNLMWYTGIRVG---FAYGENEMKYDEETSMGKSIAESWNLRGALTIGVDYFVLPALYIGAQIDPFAYTYNKTTYNPQAGLGDLSADSHNYSVLFKIGFKF 199
3 -18.000PF03922.14; Q98A70_RHILO/45-230; OmpW family  ali follow..  9  39ELDISYFF----TDNIAAELILGTTYA---------------------------NIDGQGAIGGLGKVGKVWLLPPTLTLQYHFTDFGAFE---YIGAGVNYTIFYHQQV--------GSADDLKVKNTFGAALQVGFDYMVDQHWGVNFDVKKLFLKPDFDVTVAGAKLTGKAKL-DPWVIGAGLTYRF 186
4 -16.700PF01617.17; O52104_EHRCH/32-280; Surface antigen  ali follow..  10  72AGAIGYSM--------GPRIEFEVSYETFDVKNQGGNYKNDAHRYCALDRKASSTNATASHYVLLKNE-GLLDISLMLNACYDV-VSEGIPFSPYICAGVGTDLISMFEAIN---------------PKISYQGKLGLSYSINPEASVFVGGHFHKVAGNEFRDISTLKAFATPSSACHFGVELGGRFNF 249
5 -15.600PF01389.17; OMP53_HAEIF/23-224; OmpA-like transmembrane domain  ali follow..  11  46GVFGGYQILNQDNFGLAAELYDDFG--------------------------------RAKLREAGKPKAKHTNHGAYLSLKGSYEVLDGLDVYGKAGVAL----VRSDYKFYEDANGTRDHKKGRHTARASGLFAVGAEYAVLPE--LAVRLEYQWLTRVGKYRPQDKPNTAINYNPWIGCINAGISYRF 198
6 -14.300PF06316.11; Q9LA63_9CAUD/1-199; Enterobacterial Ail/Lom protein  ali follow..  11  30TLSAGYLQ--GSDDLNGINVKYRYEFT------------DTLGLITSFSYANAEGEQKTHYNDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYALAGVSYAAGDYVTLTSDEGKKQEHLTRSDSGRRSHTALTYSAGVQINPTENIVVDLAYEA-----------------SGRGDWRTEAFIVGTGYRF 199
7 -13.900PF12099.8; R5KMA1_9BACT/7-191; Protein of unknown function (DUF3575 topsan)  ali follow..  15  32.PNIGVEASVGKKHTVQLFY------------------------------------GLNPWKQSGGDQSSLRHWTLMPEYRYWFCQSFN---GWFIGAHLMGGQFNMGSVDLPFGVFNELEDHRYEGWYAGGGITAGYQWPLSKHWNIEASLGVGYDYIQYDKFRCGECGERLKSDHTNYKLALSVLYIF 185
8 -13.600PF05736.11; PORF_PSEFL/1-186; OprF membrane domain  ali follow..  11  54GARIGYF-----TDDLSLNLSYDK--------------------------------TNHTRSNDGTGSQKIGGDTSSLTAQYHFGQAGVDSLRPYVEGGFGHQSRGNVKAD----------GHSGRDQSTLAIAGAGVKYYFTNNVYARAGVE---------------ADYALDNGKWDYSALVGLGVNF 182
9 -12.200PF05150.12; A0A0W0SPB7_9GAMM/33-312; Legionella pneumophila major outer membrane protein precursor  ali follow..  10  103.VNLVMGQHVDMGLLKDARFYGGLQYARIRLDATYNYAA--------------TIPVLAPAGFSQDRDADFNGVGIGIDYAYDLVRGFSITANTAGSILYGTSRFNNRFIFAPSGLVPINVYASKKSVVPSIEAKLGLKYAYQGVFNIEGGYQVLNYFDALHVFNLAANLKNSDFGLYGPYLGAKWV... 279
10 -11.800PF06629.12; Q47GV4_DECAR/36-256; MltA-interacting protein MipA  ali follow..  11  37PLRAGVYFWGSEDRKMGLGLAIEPRFGYKAGDGARLVGMNTRGKSIEGGPAFDWDLGFVSLSASLFTDLTNSSRGARLYAYRQIVKNETWKIGAFVGIDRMSSRVSNYFFGVNELEASPDRPAFHTGSATNATAGFDGRYRLDKDYSVLFGLQQTRLGHEVAHSPIVET-------RQATVAWLGIAWNL 221
11 -11.700PF13505.6; Q98N05_RHILO/16-224; Outer membrane protein beta-barrel domain  ali follow..  10  62ELTAGYDYMVSDRFLLGGFIDANGG------------------------------NIGPSISIPGADIDLTNSYGFDVGLRAGYLLNPDTLGYVLGGYSWQHFKLDGSG---------FAEGLNFTQNRSGYVLGVGMETVLRGN----WTLKTEYRYAAYGDKSVIDFGGGSLNVESTHTFHIAANYRF 209
12 -11.600PF07239.11; C0DX39_EIKCO/30-267; Outer membrane protein OpcA  ali follow..  15  77.VYAGYLFSPSGFKNGGLRVGGGLGYSHGK--------------------MDLHSHQTDLDGDAVDISANNLYLKAQVEYEQQLGS------GWSITPWTEAQVSLHRRVEEKYTQIEFASDGRYKQNNYSLGLGVDVNKQLGESTSLTFG---PYYRYARDKATSFTHEDENIE-TSRHSFGIRGGVRF 238
13 -11.500PF02462.15; P95343_NEIGO/52-174; Opacity family porin protein  ali follow..  13  1...AGYRI--------DLRFAVDYTR----------------------------------YKNYKAPSTDFKLYSIGASVIYDFDTQSPVK---YFGARLSLNRASAHLGGSDSF----------SKTSAGLGVLAGVSYAVTPNVDLDAGYRY-----------NYVGKVNTVKNVRSGELSAGVRVKF 123
14 -10.900PF13568.6; A6LDL5_PARD8/21-237; Outer membrane protein beta-barrel domain  ali follow..  14  52SIEGDIKKWFGESKEWGMMIGLRLENKGMETKATVKNYSMEIIGSG-------GEKLKGNWTGGVQTKVENSYFSIPVVALYQLNNRVSFSAGPFVSFATNRNFSGYVYDGYLREINPTGTKVEFSGRKFQWGAQIGTEWKAFKHLIVYADLTWGLND................................ 214
15 -10.800PF13729.6; F7YS53_VIBA7/48-300; F plasmid transfer operon, TraF, protein  ali follow..  13  120.....................................................DVENRYKNSTVDLIAFGYSEFGLALAKIYNIRGQQ-----FSFGITPKIQQLRTYKQNVSVKEFDLADYDKSETNDNAFNLDLGAVWLIND---FRVGVAVKDLFAQELKTIDGLS---SYDLDTQVTISGGYVTEF 245
16 -10.100PF04338.12; Q74AK7_GEOSL/122-330; Protein of unknown function, DUF481 topsan  ali follow..  8  1.LTAGGSIATGNTDTKAARFTVEAKYAYGEADSRTTVRNSLGSLKYDFFTTDKVYTYAQTLLEKDSFANLNLRNTEGLGVGYQFFDDRTLNLYAEAGISYFNEDVIEGEDRQDGSGRWAAGLEWEAVPDRLKIFHRQEGYYTPSVSGVDQGVRISLIAANLEVDYRFNSRPEAGKRNSDLLFIMGLTYQY 209
17 -9.850PF07585.11; Q7UY45_RHOBA/256-599; Putative beta barrel porin-7 (BBP7)  ali follow..  11  197GAQVGLQLQRCSGA-TTWDAHAKIAFGVNRAETTIAGQTTNTVPGGGSSTFAGGLLAQSTNIGTYDDSSFMVLPEIGLNLTTQVHRDMKLTIGYWSDVVRVEDAIDRNVSLFPPEAPTGTNQPAYDLTTSSFIAHIGATFQF................................................ 344
18 -9.740PF17251.2; Q6MB36_PARUW/28-317; Protochlamydia outer membrane protein  ali follow..  11  105SIGVGYPFYFSDCT-LALSPVVGYALDSQHISVEQGGLGFDSTG---------AVNPNSYGSYTHKFNSRWYGPFVGVDFNYRPYGET-------WNLYAEVEYHFARFKGRYHDELLSQHHIHRSKHAHAWTFALGADYDFSNDWTAGLCVKFQDWTASGHVSSNSSDEIINLSGNESYAINLTFGKQF 290
19 -9.740PF11924.8; D8MX37_ERWBE/123-394; Inverse autotransporter, beta-domain  ali follow..  8  84NLGLGLRHYLSDHFMLGVNSFYDRDITNARFSVGAEAWTHYLKLSANKYQRLTDWHQSPLDAMEDYDERPANGFDLAADAWLPFYPQFGASVKYEKYFGKGIVLDNSASPSDLRDSPSAVTTTVNYTPIPLLTFKAGHKSGSGSDSFVGLDINYRLLSWQEQTDRETVKVMRSLPGARYDFVDRNY.... 272
20 -9.650PF03349.16; Q9KT62_VIBCH/16-428; Outer membrane protein transport protein (OMPP1/FadL/TodX)  ali follow..  11  211GFNLGTVYEMDENNRFGLSYRYSPEFKAKDDYGQEITLPLPDIAEFSGFHKIENTQFAVHYSVQWIGWSAFDKIEFRNL--YEWQDGWHYSIGGTYYLN---SDWTLRAGYMYDTSAQDSRTSISVPDSDRQWLSAGFTYNIDDKSNVDFGFTYLMGKDVAVSENDAGSKLTATTHADAILLGLQYSRTF 413
21 -9.480PF01278.20; COLY_YERPE/30-312; Omptin family  ali follow..  7  103.YDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSY-------SYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRIN---------DFELNALFKFSDWVRAHDND-EHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIKNYTVTAGLQYRF 283
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.