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Query: PF02056.16; CHBF_ECOLI/6-188; Family 4 glycosyl hydrolase, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KVVTIGGGSSYTPELLEGFIKRYHELPVSELWLVDVEGGKPKLDIIFDLCQRMIDNAGVPMKLYKTLDRREALKDADFVTTQLRVGQLPARELDERIPLSHGYLGQETNGAGGLFKGLRTIPVIFDIVKDVEELCPNAWVINFTNPAGMVTEAVYRHTGFKRFIGVCNIPIGMKMFIRDVLMLLast
1 -86.200PF02056.16; CHBF_ECOLI/6-188; Family 4 glycosyl hydrolase  ali  100  1KVVTIGGGSSYTPELLEGFIKRYHELPVSELWLVDVEGGKPKLDIIFDLCQRMIDNAGVPMKLYKTLDRREALKDADFVTTQLRVGQLPARELDERIPLSHGYLGQETNGAGGLFKGLRTIPVIFDIVKDVEELCPNAWVINFTNPAGMVTEAVYRHTGFKRFIGVCNIPIGMKMFIRDVLML 183
2 -35.300PF00056.23; MDH_CHLAA/3-142; lactate/malate dehydrogenase, NAD binding domain  ali follow..  18  2KISIIGAGFVGSTTAHWLAAK-----ELGDIVLLDFVEGVPQGKALDLYEASPIEGFD---VRVTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIK--------------------VNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPRVIG.................. 140
3 -14.300PF01210.23; GPDA_COXBU/7-162; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus  ali follow..  13  1PIAILGAGSWGTA------LALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKAWGTKGLAKGSRLLHEVVATELGQVPMAVSLATEVAANLPTAVSLASNNS..................................... 153
4 -13.500PF03721.14; UGDH_CAEEL/10-205; UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain  ali follow..  15  2KVVCVGAGYVGGPTCAM-------AHKCPHITVTVVDMNTAKIAEWNSDKLPIYEFAARGRNLFFSSDIPKAIAEADLIFISVNTGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVIGCILREAQKNNENLKFQVLSNPEFL--TAMKDLANPDRVLIGGESSPEGLQAVAELVRI 196
5 -11.600PF03807.17; Q21544_CAEEL/2-98; NADP oxidoreductase coenzyme F420-dependent  ali follow..  20  1KIGFIGAGKM--AQALARGLINSGRITADNIIASSPKRDEVFLDQCKAL------------GLNTTHDNAEVVQKSDVVFLAVK................................................................................................... 70
6 -11.200PF02737.18; Q2YR99_BRUA2/5-183; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain  ali follow..  14  1TVGIIGAGQMGSG------IAHVCALAGYNVLLHDAAPDRLEMARQVASGKLQEEQRADAMKLIRPANSMEDLAGVDLAIEAA----------------------------------TEDETIKRKIFAQLCPVLNPEAILATNTSSISITRLASTTDRPERFIGI................. 135
7 -10.200PF08885.11; G0L2J8_ZOBGA/21-255; GSCFA family  ali follow..  10  1RLVFLGSGILFHPLAIENLVSRALRKKRYTQDDIFYHNERWQCYEAHSDLSALSQETLLGALNDGLEKTAEHLATATHIGITLGTAWVYRHLETDAVVANCHKVPQKQ-----LLGIAEMKAALNTIMDSVRSVNPKVQFILTVSPVRHLKDGFVENQRSKAHL................... 185
8 -9.280PF02558.16; Q9K9R6_BACHD/6-154; Ketopantoate reductase PanE/ApbA  ali follow..  13  1.VAVIGSGSIG------LLLYAYLKLANWPALLVTNRPEQADHLNKEGLTFVAKSGEHQPISVTATPLSSFSAEEAEVGFITVKSFA------------------------------------VKALLPQLQRK-KWDGLVFFQNGMTHL-EILRQIPARAICCGIVE............... 123
9 -9.010PF00185.24; A6LJ94_THEM4/159-324; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain  ali follow..  9  8SWAYAESHLK--PLSVPQSQILLFTRFGMDITLAYPEGFDLMPEIAKEAKKNAEKY---GGKLNISHKIEDAFKNVD-VVIPKNWGGFFVSDNPDEIRAEQAKHKNWICTEKLMKLTKKNSIYMKEVEDSVIDGPHSVVYDEAENRLHTAKAVM............................. 163
10 -8.640PF03059.16; A3DUI9_MALBX/3-277; Nicotianamine synthase protein  ali follow..  13  121KIAFVGSGPLPLTSIVLA------SNHLTKTSFDNYDINASANSKALGLVSSDPDSKRMVFHTTDIMDVTTALKDYEIVFLAALVG--------------------------------MDKMEKLKIIDHLAKYMAPGATLMLRSAHGA.................................. 232
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;