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Query: PF02278.18; R6FG56_9BACE/88-338; Polysaccharide lyase family 8, super-sandwich domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KHFFCSNYTVHRRPTWMATVKMASNKVIGTETLNGDNMKGFYSADGATYVYTDGHEYLDIFPLWDWRKLPGVTAFESDAPIPVVKGNRPRNNADFVGGLSDGQQGMTVMDLNRAGLQGRKAWIFTDNYILCLGAGIEADSTLAVTTAIEQCYKRDNLYFLSPDGNWQVLTGSDTQNQTSEVRYFHHHTGYIAWNEKLNVTATTEKRTGQWHDIMQMYPRENVSGEVIQLCLNHGTAPKNASYQYLILPDSDLast
1 -119.000PF02278.18; R6FG56_9BACE/88-338; Polysaccharide lyase family 8, super-sandwich domain  ali  100  1KHFFCSNYTVHRRPTWMATVKMASNKVIGTETLNGDNMKGFYSADGATYVYTDGHEYLDIFPLWDWRKLPGVTAFESDAPIPVVKGNRPRNNADFVGGLSDGQQGMTVMDLNRAGLQGRKAWIFTDNYILCLGAGIEADSTLAVTTAIEQCYKRDNLYFLSPDGNWQVLTGSDTQNQTSEVRYFHHHTGYIAWNEKLNVTATTEKRTGQWHDIMQMYPRENVSGEVIQLCLNHGTAPKNASYQYLILPDSD 251
2 -6.270PF01982.16; RIFK_METAC/108-226; Domain of unknown function DUF120 topsan  ali follow..  12  5..........................................LGEGQYYINIPGYR-NQFEEKLNFVPFPGTLNVQLSESSSALRNRLKEMPAVRIDGFNDGERTFGGGNCYPIKVEGIEAAVVVPDEIIALRDALKLKDGDRIV.......................................................................................................... 118
3 -6.050PF12702.7; R7E8V2_9BACE/8-101; Lipocalin-like  ali follow..  12  1................................................................NNASIEGSWVETVPGMPGMQQ------------GFVLDGDGSAS----NMATLKYEAWKKVGNRLLLSGTSIGNHQNISFTDTLTIEKLTQDSLILKRGELLLK................................................................................... 90
4 -5.980PF04715.13; B3E6B4_GEOLS/28-168; Anthranilate synthase component I, N terminal region  ali follow..  15  21.............................LESIEGGEKWARYTFLGSLVVRTKGKTVETIEHGVITSQTVADPLDSIRALLSRFTPVEVPGLPRFFGGA----VGYLGYDMKPALIDAYDAYFLVTDTLIIF....................................................................................................................... 132
5 -5.840PF11783.8; A0LEE1_SYNFM/328-499; Cytochrome c bacterial  ali follow..  11  3...............................................................WDWSK-AGQMKEGKPYKELDEFGKPGYDTKK-------------GEFKWARNVVPEYYWFNGSLTTLTARDTIDPSGVVAVGWPNGDKNDANARIFPFKVHRGRQPYDKVNKTLVIPRLFGKEGTGAYW----ADYDWDKSAAAGMAYAGLPFSGELGFVDSTYVFPITHMVAPKDKAVQCQECHSKN 172
6 -5.770PF05452.11; CLAVC_STYCL/1-80; Clavanin  ali follow..  19  29KVFHLLGKIIHHVGNFVYGF----SHVFGDDQQDNGKFYGHYAEDNGKHWYDTGDQ................................................................................................................................................................................................... 80
7 -5.640PF00590.20; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases  ali follow..  11  97..................................RAGKNVCLLDGGDPCIFGPYIWTVEVLQDLDPVIIPGVSCLNAANAALHRGLTFGVAAHSAILTNAADTKPGYGGSDTIARMAATRASMVVEKLVAELGRFYPPDTPVAIVYAKDEQVIRGTLESIL.......................................................................................... 234
8 -5.500PF15371.6; G1Q341_MYOLU/52-138; Domain of unknown function (DUF4599 topsan)  ali follow..  13  1.......................................................................................................................................................................................................KLKPKSRDAVSKARRHFRKETEKPWELLSVMKSQGWLPQEGSVRRLLCADT. 51
9 -5.480PF16316.5; D7B090_NOCDD/9-176; Domain of unknown function (DUF4956 topsan)  ali follow..  11  48.................................................................................................AVGFGLFGVLSIRLRSDLISQGEIGYYFTAIALGLVNAVAAPMPWVLLGLN....................................................................................................... 99
10 -5.330PF07508.13; A5Z6W8_9FIRM/147-269; Recombinase  ali follow..  10  10..............................................IFQWASEGNTAAEITRKLYAMNIPTPGEYRKLKGKDYYNVLRILEDQRYIGTYVIGKRKVKEIGSRHTQLKDESEWFKIPNHHPAI---VSVDLFEKANASIKR..................................................................................................... 122
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.