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Query: PF02291.15; A5E2M9_LODEL/42-174; Transcription initiation factor IID, 31kD subunit, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst EAIVPRDVRLLHLIFATQGIQNYQDHVPLQLMDFAHRYTRGVLKDALVYNEHAKPAGASSSSSAANSTTVNTDDIRLAIAARSNYQFKPVPPKELMLELAQERNSRPLPPVIPKWGLNLPPEKYCLTAKDWDSLast
1 -82.100PF02291.15; A5E2M9_LODEL/42-174; Transcription initiation factor IID, 31kD subunit  ali  100  1EAIVPRDVRLLHLIFATQGIQNYQDHVPLQLMDFAHRYTRGVLKDALVYNEHAKPAGASSSSSAANSTTVNTDDIRLAIAARSNYQFKPVPPKELMLELAQERNSRPLPPVIPKWGLNLPPEKYCLTAKDWDS 133
2 -15.100PF15630.6; G4MZ92_MAGO7/9-84; CENP-S protein  ali follow..  20  12.......GKIVDEETMKKQR-NATPQFIGALTDMVFTQIENVAKDLESFSSHA------------GRSTITTDDVLLLARRN................................................... 73
3 -14.900PF02969.17; TAF6_SCHPO/3-68; TATA box binding protein associated factor (TAF)  ali follow..  19  5......NIESIKDVAEMLGIGNLADEPAAAIAMDLEYRIHQVVQEATKFMVHSK------------RTVLTSADISSALR..................................................... 66
4 -12.000PF15511.6; B8MMW5_TALSN/360-468; Centromere kinetochore component CENP-T histone fold  ali follow..  10  5VPLLPT--GVVKRLAARFTKAKINKETLAAIEQASEWFFEQASEDLAAYSKHA------------GRKTIDESDVVALMRRQ................................................... 78
5 -11.200PF17027.5; R0KLX4_NOSB1/8-119; Histone-fold protein  ali follow..  10  6.........SIAEIVMQSGFERISEQALNILGDLFKFYSERILEKIKKMNKDHSFSIKYLVDESS-LPSYQSNELI......................................................... 71
6 -10.100PF03847.13; TAF12_SCHPO/344-411; Transcription initiation factor TFIID subunit A  ali follow..  21  3........RKLHDLLQQID-EKIEPEVEELLLEIADEFVESVTNFACRLAKHR------------KSDTLDVRDVQLHLE..................................................... 63
7 -9.340PF00125.24; CENPA_SCHPO/1-118; Core histone H2A/H2B/H3/H4  ali follow..  20  49.......SRIVREISSEFVANRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAK------------RVTIMQRDMQLARRIR................................................... 118
8 -8.980PF03540.13; C3XPP3_BRAFL/47-96; Transcription initiation factor TFIID 23-30kDa subunit  ali follow..  12  1.PTIPD--AVTAYYLNRAGFEASDPRIVRLISLAAQKFVSDIANDALQHCK.................................................................................. 48
9 -7.970PF05236.14; I3KPC9_ORENI/575-820; Transcription initiation factor TFIID component TAF4 family  ali follow..  15  46.......LRRILDTAKKFGVSEVPPEVVNLVSHATQSRLRTLLEKVSAIAQHRTDGGKDEERYEQ-TSDVRSQLRFFEQLERLEKQRKDEQEREMLLKAAKSRAR............................ 142
10 -7.330PF07524.13; Q9VP40_DROME/6-77; Bromodomain associated  ali follow..  12  5........TVLDNLLASKNCEVVDDVLRQSMLELLRGKFREIARQTTNWSNHAGRCA............................................................................ 53
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.