Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF02315.16; B1M2D4_METRJ/6-92; Methanol dehydrogenase beta subunit, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .
# Score Template Links and tools%idFirst TAAMLIAGAAFAVPALAYDGQTCKAPGNCWQPKPGFPEKVAGTKYDPKHDPKEVSKQAESIKQMEERNRKRIENAKKTGKFEYDVAKLast
1 -81.500PF02315.16; B1M2D4_METRJ/6-92; Methanol dehydrogenase beta subunit  ali  100  1TAAMLIAGAAFAVPALAYDGQTCKAPGNCWQPKPGFPEKVAGTKYDPKHDPKEVSKQAESIKQMEERNRKRIENAKKTGKFEYDVAK 87
2 -7.870PF00887.19; B7PHH9_IXOSC/19-99; Acyl CoA binding protein  ali follow..  19  27.................YARYKQAHEGSCKAPKPAFYDIKGKQKWDAWNKLGDLCETSAMREYVERVEQ.................. 78
3 -6.680PF00504.21; Q8S3T8_CHLRE/57-225; Chlorophyll A-B binding protein  ali follow..  18  2....................................PAYRLAKF-DYGWDTAGLSADPETFKRYRELELIRWAMLGALGCITPEL.. 53
4 -6.520PF17900.1; PSA_HUMAN/59-245; Peptidase M1 N-terminal domain  ali follow..  10  104SKYTTPSGEVRYAAVTQFEATDARRAFPCWD-EPAIKATFDISLVVPKDRVALSNMNVIDRKPYPDDENLVEVKFART......... 180
5 -6.450PF13648.6; B5CYD5_BACPM/35-135; Lipocalin-like domain  ali follow..  13  2..................EGTWMLIHSKGWELCSNAPEK---DEWDKDYDFSTLNSDSERITKIADNKYSFSFGYYTGTNWYNEPST 69
6 -6.190PF10210.9; F6VUI5_ORNAN/52-147; Mitochondrial 28S ribosomal protein S32  ali follow..  24  4..............ALTSDGRTI----VCYHPTLDFP-------YSPLPRPDPSKNEAETHDQILKMQLEVEKKRLEPEINIEQLSK 68
7 -6.160PF16037.5; B3LYY2_DROAN/87-178; Domain of unknown function (DUF4790 topsan)  ali follow..  16  57.........................................TTVWPPLHTRLELNVFERDFLKLSKREQYRYKKIME.......... 92
8 -5.970PF03746.16; D3EM31_GEOS4/4-242; LamB/YcsF family  ali follow..  17  21ELLRSITSANIACGFHAGDPAVAVESGAAIGAHPGLPDLAGFGRRRMDITPVEAYDQVGALMAFAIQEGAGLQHVKPHGALYNMAAA 118
9 -5.880PF02495.17; Q9DJU7_9VIRU/3-63; Triple gene block 3  ali follow..  18  2.VNLAIGLLAFSITAFIIASFGSGSSNSCMVLITGERALVTGCEVTP-----ELTNLVQQLKPHS...................... 60
10 -5.630PF07771.11; B7QKC2_IXOSC/1-121; Tick salivary peptide group 1  ali follow..  23  59..................NGEKCFENGTCQNTNSGGPNESDDNTPAPTEKPKQKKKKPKKTKKPKRKSKK................. 120
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.