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Query: PF02324.16; GTFB_STRMU/269-1074; Glycosyl hydrolase family 70, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LLMTWWPSQETQRQYVNYMNAQLGINKTYDDTSNQLQLNIAAATIQAKIEAKITTLKNTDWLRQTISAFVKTQSAWNSDSEKPFDDHLQNGAVLYDNEGKLTPYANSNYRILNRTPTNQTGKKDPRYTADNTIGGYEFLLANDVDNSNPVVQAEQLNWLHFLMNFGNIYANDPDANFDSIRVDAVDNVDADLLQIAGDYLKAAKGIHKNDKAANDHLSILEAWSDNDTPYLHDDGDNMINMDNKLRLSLLFSLAKPLNQRSGMNPLITNSLVNRTDDNAETAAVPSYSFIRAHDSEVQDLIRDIIKAEINPNVVGYSFTMEEIKKAFEIYNKDLLATEKKYTHYNTALSYALLLTNKSSVPRVYYGDMFTDDGQYMAHKTINYEAIETLLKARIKYVSGGQAMRNQQVGNSEIITSVRYGKGALKATDTGDRTTRTSGVAVIEGNNPSLRLKASDRVVVNMGAAHKNQAYRPLLLTTDNGIKAYHSDQEAAGLVRYTNDRGELIFTAADIKGYANPQVSGYLGVWVPVGAAADQDVRVAASTAPSTDGKSVHQNAALDSRVMFEGFSNFQAFATKKEEYTNVVIAKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKGIKVMADWVPDQMYAFPEKEVVTATRVDKFGKPVEGSQIKSVLYVADSKSSGKDQQAKYGGAFLEELQAKYPELFARKQISTGVPMDPSVKIKQWSAKYFNGTNILGRGAGYVLKDQATNTYFNISDNKEINFLPKTLLNQDSQVGFSYDGKLast
1 -215.000PF02324.16; GTFB_STRMU/269-1074; Glycosyl hydrolase family 70  ali  100  1LLMTWWPSQETQRQYVNYMNAQLGINKTYDDTSNQLQLNIAAATIQAKIEAKITTLKNTDWLRQTISAFVKTQSAWNSDSEKPFDDHLQNGAVLYDNEGKLTPYANSNYRILNRTPTNQTGKKDPRYTADNTIGGYEFLLANDVDNSNPVVQAEQLNWLHFLMNFGNIYANDPDANFDSIRVDAVDNVDADLLQIAGDYLKAAKGIHKNDKAANDHLSILEAWSDNDTPYLHDDGDNMINMDNKLRLSLLFSLAKPLNQRSGMNPLITNSLVNRTDDNAETAAVPSYSFIRAHDSEVQDLIRDIIKAEINPNVVGYSFTMEEIKKAFEIYNKDLLATEKKYTHYNTALSYALLLTNKSSVPRVYYGDMFTDDGQYMAHKTINYEAIETLLKARIKYVSGGQAMRNQQVGNSEIITSVRYGKGALKATDTGDRTTRTSGVAVIEGNNPSLRLKASDRVVVNMGAAHKNQAYRPLLLTTDNGIKAYHSDQEAAGLVRYTNDRGELIFTAADIKGYANPQVSGYLGVWVPVGAAADQDVRVAASTAPSTDGKSVHQNAALDSRVMFEGFSNFQAFATKKEEYTNVVIAKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKGIKVMADWVPDQMYAFPEKEVVTATRVDKFGKPVEGSQIKSVLYVADSKSSGKDQQAKYGGAFLEELQAKYPELFARKQISTGVPMDPSVKIKQWSAKYFNGTNILGRGAGYVLKDQATNTYFNISDNKEINFLPKTLLNQDSQVGFSYDGK 806
2 -26.400PF00128.24; MALT_AEDAE/44-406; Alpha amylase, catalytic domain  ali follow..  10  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GDLDGVTEKLKYLKDIGMDGVWLSPIFSSP--------MADFGYDISNFREIQT----EYGDLDAFQRLSDKCKQLGLHLILDFVPNHTSDQHEYFKKSVQKDETYKDFYVWHPGVHSNWISVFRGSSWEWNEERQEFYLHQFLKEQPDLNYRNPAVVEEMKNV---LRYWLDRGVSGFRIDAVPYLFESDIIDGRY............................... 191
3 -17.100PF14872.6; D5A215_ARTPN/18-828; Hypothetical glycoside hydrolase 5  ali follow..  10  1...................................................................................................................................................................................................................................................................................................................................................................................................NLLNWAATVEHSKASYFEKAQILAQKLGAHWLGDGLWTPKLTSQVMRRLEIFLEVLIPIDEIDLRADQQVVMQPGSREVGSFYWLRYIDQAEKLQAIRD---------LAYSLPYGVFGPAELYDIETLQAQRPDLEYFSRRGTSRHPTIDLHDDDLSPLPNPKLIPRVRAPKNILQLH------GTATAAGTFEGLTSLPLEENYIGYGAVQLLPTEDILEINLSKPDTQDWGYDVPILG--TNPAIMGSRRPDEVVDFIATLHTGPIQVIYDIVYGHA--------------------------------------DNQSELLLNRQFLKGQNMYGQDLNHQLPTVRAILLE---MQRRKMNTGVDGIRIDGGQ........................................... 392
4 -15.900PF14701.6; C8VTT8_EMENI/134-575; Glycogen debranching enzyme, glucanotransferase domain  ali follow..  14  5............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LNALSIFSVNSKFM-------GKYPEDWNQYLNSISRRKYNMVHFTPLMKR--------GASNSPYSIFDQLQFDDIAFP--NGENDVQKLIKDMEEKSLLSLADVVWNHTANNSKW..................................................................................................................................... 105
5 -7.290PF14228.6; F6GVU1_VITVI/618-1735; Cell morphogenesis central region  ali follow..  9  165.KLDQW------LMYAMFACSCPFDSREASSLGAAKDLYHGSEAHIHAATMALGHSHLEGELASFIDEVSMETEGKPKWKSQKARREELRVHIA---------------NIYRTVSENIWP---------------------GMLGRKPIFRLHYLKFIEETTRQILTAPSENFQEIQPLRYALAS-----VLRSLAPEFVDSKSEKFDLRTRKRLFDLLLSWCDDTGSTWVQDGVSDYRREVERYKSSQHSRSKDSVDKLSFDKEVSEQVEA---------------------------------------------------------------------QWASMNAMASLLYGP-------------FDDNARKMSGRVISWINSLFNEPAPRAPFGYSPADPRTPSYSKYTGEGPRGAAGRDRHRGGHLRVSMALKNLLLTNLDL-FPACIDQCYYSDAAIADGYFSVLAEVYMRQLSLILYKVVDPNRQIRDDALQMLETLSVREWAEDGGEGSGSYRAAVVGNLPDSY-----QQFQYKLSCKLAKDHPELSQLLCEEIMQRQLDAVDIIAQH--QVLTCMAPWIENLNFWK---------LKDSGWSERLLKS------LYYV----TWRHGDQDEIEKLWSTIKPRNISPVLDFLIT............................................................................................................................................. 705
6 -6.900PF16134.5; E9CUD7_COCPS/133-865; THO complex subunit 2 N-terminus  ali follow..  10  5RIKNW--SSTGKQQVVEVGKEACSNVDTITLASLFQEVIQSAFECRIPVKQIIGERSDSNDGDRTAPYLAFDSHSIFLDTLSILTDADSSRENLRPLAFATGISPSLMRLQLDTPLLQALGRDTFGRMGIRKQTNILYRQSNNL------LREESEGYSKLLTELFTTSNNEPPIGMDVGRLDVTLDVFAAVLVKQYRFCVKFLRASSWWPKEDNAPEGGIGLGLPKWALPGSPGWSTTDEEREEALRLNEHRDRLFWDRAKQVGIKAFFEIGRSLASDSDNHMLVSDIDVETRDETQKWIEQTGTLPPKGNRVAAQL----LGFKLRFYSSDARNATDVLP-DNLIYLAALLIKV--GFISLLYPHLWRPDEEMEVLKEEKMKEKAEREKAGRRGAGMMNALMTAGALADDTLTLPARSRGLETRSATPAKEQEQDKDKTAPQKTEEKQKVLLLKSLLAIGALPESLY---ILGRFPWLLDGYPELPEYIHRILHYCLHK---VYQSVQPLPSRSELRDRKKIVGSEQGAVSQGRVRLSDAAPQRVLRWALLDKQDNDGTDYRFYWDDWTDSIPVCQSIDDVFALCSSFLNLSGCRRLLVPALSLTKNNPGVVNEVFE--FPQHVRFSI-------YAARFETKDALKRLSKTNVRPMA.................................................................................................................................................. 732
7 -6.880PF14488.6; D4IPL3_9BACT/51-219; Domain of unknown function (DUF4434 topsan)  ali follow..  7  2..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RATFLDEVSWDIPHQNWGVKEW----DADFKAMKQMGINTVVL-------------IRAGLGSWIAAPFDCLLRTGKVKYPPVDLVEMFLALSDKYGMDFWFGTYDS............................................................................................................................................. 91
8 -6.820PF12905.7; Q6A7F3_CUTAK/478-751; Endo-alpha-N-acetylgalactosaminidase  ali follow..  12  1.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QDAAVATRDVTMKPTGSGDVANKVITHIPFN-----------IVSQATHPFLRTLDDVKRISLATDGLGQQA-------LLKGYQAEGHD-SAHPDYGGNVSHRAGGMKDLEKLTESGRQWNTDFGIHVNLVESYPEANHFGDNLVKPYQKA......................................................................................................................... 133
9 -6.750PF00311.17; CAPP_SYNY3/193-1034; Phosphoenolpyruvate carboxylase  ali follow..  8  6LVITAHPTEIVRHTIRRKQRR-------------DRILRKLDQLQGSVTGRDWLNTWDAKTAIAQLTEEIRFWWRTDELHQFKPTVLDEVDYSLHYFDEVLFDAVPELSKRLGQAIKETFPHLRAPRANFCYFGSW---VGGDRD-GNPSVTPEVTWQTACYQRGLVLGKYLFSLGELVAILSPSLHW-CKVSQELLDSLERDRIQLPEIYEELSLRYRQEPYRMKLAYVTKRLENTLRRNNRLANPEIQRNLTETGLTCLELENLISSRHAEAIAEIAEYMGVLTTPYEEMAEEDKLAWLGVELQT-RRPLIPQEMPFSERTRETIETL--RTLRHLQMEFGVDICQTYVLLLAKEAGVP-LF---------ETVEDLKNAPGIMDSLFSLAGSYHSLKELQNQPPDYYQIPTTTALLNPGNLQEIMVGYSDSNSSNWEIHKAQKSLQAVAQSHRVILRLFHGRGGSVGR---GGGPAYKAILAQPAGTVDGRIKITEQGEVLASKYSLPELALYNLTAVIQASLLKSSFDFIEPWNRIMEELACTARRAYRSLIYEEPDFLDFF-------------------LTVTPIPEISELQISSRPARRKGGKADLSSLRA-----VFSWTQTRFLLPAWYGVGTALKSFVDQDPVKNMKLLRYFYFK............................................................................................................................................. 703
10 -6.450PF03979.14; A6VU43_MARMS/3-80; Sigma-70 factor, region 1.1  ali follow..  15  4........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QSRLKELISKG----------------------KEQGYLTYA--EVNDHLPDDLSDPEQVEEIIAMINDMGITVSEV................................................................................................................................................. 56
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.