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Query: PF02348.19; NEUA_MOUSE/44-298; Cytidylyltransferase, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLIEMGYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLRFGYFGKEKLKEIKLLVCNIDGCLTNGHIYVSGDQKEILast
1 -115.000PF02348.19; NEUA_MOUSE/44-298; Cytidylyltransferase  ali  100  1AALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLIEMGYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLRFGYFGKEKLKEIKLLVCNIDGCLTNGHIYVSGDQKEI 255
2 -21.400PF01128.19; ISPD_ECOLI/8-229; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase  ali follow..  11  2CAVVPAAGFGRRMQTKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANH---PQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRD-----TMKRAEPGKNAIAHTVDRNGLWHALTPQFF-PRELLHDCLTRALNEGATITDEASALEYGRADNIKVTRPEDLALAEFYLTR..................................... 222
3 -11.600PF12804.7; Q5FTR9_GLUOX/6-165; MobA-like NTP transferase domain  ali follow..  16  1.GLILAGGASRRMTDKAALDYHGKPQLQAAFEVL--TPVVEQCFVSVRPGQTSDPLRS--------SFPQIVDTVDVDGPAAGLLSAHRAYVAWLVLACDLPMLDRGTLDTLIAARDGEHVAVSY.................................................................................................................................. 117
4 -10.400PF00483.23; GLGC_SYNY3/15-285; Nucleotidyl transferase  ali follow..  15  1LAIILGGGGTRLYP-KPAVPLAGKYLIDIPVSNCINSE-IVKIYVLTQSASLNRGFQEGFVEVLAAQQTKDNPDQGTADAVRQYLWLFREWDVDEYLILSGDHLYRMDYAQFVKRHRETNADITLSVVPVDDPELGLMKIDAQGRITDFSEKPQGEAAEKAKLNPYIASMGIYVFKKEVLHN---FGKEIIPDSASDHNLQDIGTIEAFYEANLALTKQ.................................... 271
5 -8.780PF01983.16; COFC_ARCFU/1-205; Guanylyl transferase CofC like  ali follow..  16  3.ILIPFKANSSILSEEERKELA-RLMLLDVIDAAKPFGEIKVVCPSELDVEGVEVVVDTSD-------------------LNTTVNKVMDEAPLAVIMSDLPLLSEEVLKRFFE----TEGDVVVAPGR---------------------------------------KGGTNMLLVRKRGFRVSYHFGSFFKHLEMARKVDIDDESDLLEL........................................... 170
6 -7.020PF16487.5; X1WIS6_ACYPI/471-553; Mid domain of argonaute  ali follow..  13  1...LP-SHGVWDMRGKQF--FIGVKITNWAIACFASQFSVRDDAIKNFTEQLQRISNEAGMPIVDAPCYCK--YVTGLDQVEPMFNYLIK..................................................................................................................................................................... 82
7 -6.780PF13641.6; A4XR32_PSEMY/86-342; Glycosyltransferase like family 2  ali follow..  9  4VYLL--------VTSFRIEALTTAMVYRSVIREAIDCGYPSTLVCSIVELSDELLIKNLHVKLDIVRIPGTGKRDGLAHGFRAISRQMPDRDAVVAVIDGDTVLEPGVVRKSVPWFKLF--PNVGGLTTNEFCEVRGSYMMSEWHKLRFAQRHLNMCSMALSKRVLTMTGRMSVFRASVVTDPEFIRDVESDHLEHWRLGFQFLTGDDKSSWYSLMRL..................................... 220
8 -6.640PF09314.11; Q5M3F3_STRT2/7-191; Domain of unknown function (DUF1972 topsan)  ali follow..  12  4VFII----GSRGLPAK----YGGFETFVEQLVSNQMSSQVKYHVACLSDEKAYEHFEYKGVDCFTIKRVIAYDMMAINYALKKICEQNIKEPIFYVLGNTI.......................................................................................................................................................... 103
9 -6.590PF03009.17; YQIK_BACSU/7-235; Glycerophosphoryl diester phosphodiesterase family  ali follow..  9  2......RGASGQFPENTMLAFAGADGIELDVQLTK-----DGRIVVIHDERLNRTTSLKGFVKDTAYDEVKTANAAAVPLLEDVLSWAVKKDFLINIELKNSVIRYEGMEEKVEAVKRFNVEDRVILSTFNHDSLALCARLAPHIERAVLTSDVLYQADRYIASGYHPKINSPGVTDEVLKKMRNGLIKVRPYTVNRPEDMK----------------------------RLIEAGADGMFTD............ 225
10 -6.070PF06833.11; A6T8S0_KLEP7/11-266; Malonate decarboxylase gamma subunit (MdcE)  ali follow..  12  81VAVIDVPSQAYGRREEAFARLAGHPVIGLIVGKAMSGAFLA-IAFNDSGVLVHAMGKASAARITLRTVEALEKLAATIPPMAYDVSNYATLGLLSAL--LDISNPDAPDEGDLSLVSRTLRDAI................................................................................................................................... 224
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]