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Query: PF02424.15; C5BM31_TERTT/32-314; ApbE family, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGTEVSITFWHDDPAQAQQLLADGMAEMRRLDRELSPWIESSELATLNRLAAKAPQKISSEMLFLVDKSLYFSHLTHGAFDITFASVGWFYDYREKKQPSEAQRSALLPAINYRWLKLDKTAGTLAYAHDNVRIDLGGIAKGYAVDRVAQLLENAGVRNATISAGGDSQIVGDKRGKPWIIGIKNPRDGGKEEAEAAILLPLENTAISTSGDYERYFIDQKTGERVHHIINPRTGKSVEGVVSVTILGPRGSDTDPMSTSVFVLGVEKGLALVNSLANFECIILast
1 -110.000PF02424.15; C5BM31_TERTT/32-314; ApbE family  ali  100  1MGTEVSITFWHDDPAQAQQLLADGMAEMRRLDRELSPWIESSELATLNRLAAKAPQKISSEMLFLVDKSLYFSHLTHGAFDITFASVGWFYDYREKKQPSEAQRSALLPAINYRWLKLDKTAGTLAYAHDNVRIDLGGIAKGYAVDRVAQLLENAGVRNATISAGGDSQIVGDKRGKPWIIGIKNPRDGGKEEAEAAILLPLENTAISTSGDYERYFIDQKTGERVHHIINPRTGKSVEGVVSVTILGPRGSDTDPMSTSVFVLGVEKGLALVNSLANFECII 283
2 -7.500PF16116.5; R6Y5S7_9BACT/235-498; Domain of unknown function (DUF4832 topsan)  ali follow..  13  131...................................................................................................ERNVFDYIRDHLGYRIELQEMTAPAVLLAGQANPVEISLINRGFS-----TLFNEHPVYLVLIDESGKVCHV-DANVNDWQPYETGDSSCTPLLHTISTDLQIPLG--LAKGMYSLGL----------WIPDGSARLQYDNRFAIRCAN................................... 264
3 -7.180PF09189.10; Q5SLZ2_THET8/94-166; Domain of unknown function (DUF1952 topsan)  ali follow..  11  4.......................................................................................................................................................FPPWLLERYLEEWGGTREGEGVYRLPGAVVRFRE------VEPLKVGSLSIPQLRVEVEGEEAERWFERFAASR.......................................................... 73
4 -7.120PF06418.14; A1AWV9_RUTMC/19-281; CTP synthase N-terminus  ali follow..  16  10.......................................................................................................................................VSSLGKGIVSASLASILESRGLNITMLKLDPYINV---------DPGTMSPFQHGE-----VFVTNDGAETDLDLGHYERFIHSKLGGRVYENVIERELGDTVQIIPHITNEIKRLTQVGGQGADVALVEIGGTVGDIESLPFMEAI. 154
5 -5.810PF04269.12; C5BDA2_EDWI9/7-112; Protein of unknown function, DUF440 topsan  ali follow..  11  6......................................................................................................................................ETLDQAYDIFLELAADNLDPADVLLFNLQFEQRGAAELFDPAEDWQVEVEVDLNPDFYAEVVIGLTNGNPDSDDIEDVFARILICREKDHKMCHIL..................................................... 103
6 -5.720PF08145.12; G1XNV9_ARTOA/148-406; BOP1NT (NUC169) domain  ali follow..  13  23............................KALDTLLDSIELPKGWTGLVDKNSGAALNLTEEELEIVKK-LQRSEITDEGFDVEQMPLSSAPEPKRRFVPSKHEQKRIMKIVGIREGRILPHKPQAETSQEPEFYDI------WADDAPPKPDHVMNIPAPKLPPPTHDESYNPPLEYLPNDKERKEWEEQDPEDRDKNYLPRTHKALRLVPGFNGFIG-----ERFERCLDPRVRRNKLNIDPASLLPKLPSPDD............................ 254
7 -5.700PF07957.11; Q6FUX1_CANGA/1-212; Protein of unknown function (DUF3294 topsan)  ali follow..  11  60.............DSTDFATNDDLVQLVAELQGELNVIEERSIRRLVNSTKTDQDATLAP----IPNADGEAPSLTDEMFPHTLKEFEEM---------DDIRLYRLAKFYEKTMKEQEDFDKVLEGKVEDLHISKLSDED---ITKELKKLSKDELDDAFNDIARYLGLRSRRGTGIW........................................................................................................ 212
8 -5.630PF05036.13; Q72F11_DESVH/133-209; Sporulation related domain  ali follow..  13  1...........................................................................SGKAFYIDIRRF--------AYKSDALRLVRSLEKTGLASARAVRLEGT---SNKAWMVAVGPFRNFHDAAGVRSTLQRKQPQSEII......................................................................................................................... 76
9 -5.520PF15232.6; I3KXN7_ORENI/2490-2562; Domain of unknown function (DUF4585 topsan)  ali follow..  16  14................................................................................................................................................................................................................ETGKY--FYIEVPVQPLRKMLFDPETGQYVEVLIPQQTMSHSGLYPPSAAPYPPLPNP................. 69
10 -5.450PF10262.9; E6N4I4_9ARCH/4-80; Rdx family  ali follow..  11  33.................................................................KKFSVTLDTSDGGTFEVYIDGERIFSRHEARRFPTLDEIAEQVDK............................................................................................................................................................................. 77
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.