current user: public
If you have questions about the server, please let us know.

Query: PF02502.18; R5PD76_9CLOT/3-141; Ribose/Galactose Isomerase, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst IAIGSDHGGYELKLEVIKHLKDRGFEVTDYGCDSTASCDYPIYGKAVAEAIAAGKQDLGILICGTGIGMSMVANKVEGVRAALCSDCFSAQATREHNNANVLCMGARTIGPGLALMIVDKFVDTPFSNDERHVRRIKMFLast
1 -87.200PF02502.18; R5PD76_9CLOT/3-141; Ribose/Galactose Isomerase  ali  100  1IAIGSDHGGYELKLEVIKHLKDRGFEVTDYGCDSTASCDYPIYGKAVAEAIAAGKQDLGILICGTGIGMSMVANKVEGVRAALCSDCFSAQATREHNNANVLCMGARTIGPGLALMIVDKFVDTPFSNDERHVRRIKMF 139
2 -9.720PF14272.6; Q5WI60_BACSK/10-123; Glycine-rich SFCGS  ali follow..  19  37.............................................RLGDVMDTENADIGISFCGSGGAGAITAQTKYGYPAHYGMRSVDEGITAINEGKKVLGFG--MDTEELGKRITEAYLK................ 113
3 -8.540PF02878.16; GLMM_CHLTR/6-144; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I  ali follow..  21  44VVVGKDLSGYMFENALIAGLTSMGIETLMLGPIPTPGVAF---------ITRAYRADAGIMISAS-------------------------HNPYRDNGIKIFSSDGFKIGQAVEERIEAMVASKDFG............ 138
4 -7.910PF06057.11; Q8PB04_XANCP/266-453; Bacterial virulence protein (VirJ)  ali follow..  17  5IFVSGDGGWAGLDEEVADALVAQGIPVVRYFWSERTPQGFATDLDRIARFYAQRWQRRRVVLIGFSQGADVLPAAINKLPAPTKQNLRMTALLSVGKLAD....................................... 109
5 -7.410PF02302.17; Q6D103_PECAS/3-99; PTS system, Lactose/Cellobiose specific IIB subunit  ali follow..  18  3...........................................................VLACSAGMSTSLVVTKMEKEAEAIPEQNLRDELQEFGSDIIAVLLGPQV............................... 60
6 -6.080PF16654.5; D2RJW0_ACIFV/122-277; Diaminopimelic acid dehydrogenase C-terminal domain  ali follow..  22  1...GWDPGLFSLARLYSNAILPDGKDYTFWGK-------------------------------GVSQGHSDAIRRIPGVKNAKQYT----------------------VPVEAALEAVRSGSQPELTTRQKHTREC... 80
7 -6.080PF08241.12; Q83DM1_COXBU/77-169; Methyltransferase domain  ali follow..  14  5..............................................................CAKGFLVKDFMKACPGLEAGIDISEYALMNCEPEGNADHLPFPDNSFDAVISLNTVHNLPRERVIIALREIQRVSG. 88
8 -5.840PF16479.5; Q5L9L8_BACFN/5-97; Domain of unknown function (DUF5056 topsan)  ali follow..  10  2............DKLLKQFFGEQKQEIEDNGFSRRVMRNLPGRNHRLVQAWGAACAVVCVILFFTLGGLQATISTLREVFVSMVQQSATTGFDPKSLYIAALVL................................... 93
9 -5.760PF10941.8; Q9KF97_BACHD/1-116; Protein of unknown function DUF2620 topsan  ali follow..  24  6.......GGQVDKKEIESLIQEKAGERVETIVKSD---------LDAAMAIKSNEADYYFGACHTGGGGALAM.................................................................. 62
10 -5.750PF08887.11; Q887W6_PSESM/2-101; GAD-like domain  ali follow..  15  24...........LPNQLLTYWAEHGWCGYGDGIFWTNPQEYDAVVASWLEGTKFETFDAYHLIARSAFGDLYLWGEEIGASLKI........................................................ 96
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.