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Query: PF02558.16; Q9K9R6_BACHD/6-154; Ketopantoate reductase PanE/ApbA, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst VAVIGSGSIGLLLYAYLKLANWPALLVTNRPEQADHLNKEGLTFVAKSGEHQPISVTATPLSSFSAEEAEVGFITVKSFAVKALLPQLQRKKWDGLVFFQNGMTHLEILRQIPARAICCGIVEIGAKRESDVRVQHTGDGAIWIGDMVGLast
1 -69.200PF02558.16; Q9K9R6_BACHD/6-154; Ketopantoate reductase PanE/ApbA  ali  100  1VAVIGSGSIGLLLYAYLKLANWPALLVTNRPEQADHLNKEGLTFVAKSGEHQPISVTATPLSSFSAEEAEVGFITVKSFAVKALLPQLQRKKWDGLVFFQNGMTHLEILRQIPARAICCGIVEIGAKRESDVRVQHTGDGAIWIGDMVG 149
2 -22.900PF01210.23; GPDA_COXBU/7-162; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus  ali follow..  20  2IAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLAKTRIAWGTKGL.............................................. 106
3 -21.600PF10100.9; H6NF63_9BACL/6-429; Staphylopine dehydrogenase  ali follow..  14  3VLILGTGPASVQLAVTLKNKWNCIGIAGRESVRSEALDESGRRVRADIQNEKHQAMQVFQGYGTITGEWDTLILAVTTDAYVAVLKQIHGERVRCMLLLSPTFGSNRLVRHY..................................... 129
4 -17.700PF10727.9; Q743Y6_MYCPA/8-128; Rossmann-like domain  ali follow..  15  7VGIISAGRVGTALGVALERADHVVVCSAISHASRQRAQR-------------RLPDTPVATPPEVAAGAELLLLAVPDSELAGLVSGLAATEAGTIVAHTSGANGVGILAPLTRQGCIPLAIH.......................... 120
5 -14.700PF02254.18; Q92CZ9_LISMO/5-120; TrkA-N domain  ali follow..  14  1FAVIGLGRFGGSICRSLVEQGMEVLAIDSDEERVNEYMSIATHAVIANSTDENA------LRQLGIRNFEHVIVAIDIQSSILTTLILKEMGVKYVTAKATNDKHAKLLDKIGADRVV............................... 114
6 -14.100PF07991.12; ILVC_METAC/15-178; Acetohydroxy acid isomeroreductase, NADPH-binding domain  ali follow..  13  6IAIMGYGSQGHAHARNLHESGLNVVVGLRKGSSSWAKAESD----------------KVMTVEEAAKAADVIMILLPDEKQASVYQIEPSLEAGNALVFAHGF.............................................. 96
7 -13.200PF03446.15; Q8FTI1_COREF/15-184; NAD binding domain of 6-phosphogluconate dehydrogenase  ali follow..  13  2IGVVGLAVMGSNLARNFARNGHTVAVYNRSTDKTDKLISDYATDGNFIPTKTVEDFVAALEKPRR-----AIVMVQAGAATDAVINQLADAMEEGDIIIDGGNALYTDTVCREKEMAARGRHFVGAGISGGEEGALNGPSIMPGGP... 142
8 -13.000PF00670.21; SAHH_DICDI/191-351; S-adenosyl-L-homocysteine hydrolase, NAD binding domain  ali follow..  12  26AVVAGYGDVGKGCAQSLSKMGARVLVTEIDPINALQACMDGYQIVTM---------------ETAAPLSNIFVTTTGCRDIVRGEHFAVMKEDAIVCNIGHFDCEIDVLNANAKKDTVKPQVDRYTLANGVHIILLAEGRLVNLGCGTG 161
9 -12.500PF03807.17; Q21544_CAEEL/2-98; NADP oxidoreductase coenzyme F420-dependent  ali follow..  14  2IGFIGAGKMAQALARGLINSG--------------RITADNIIASSPKRDEVFLDLNTTHDNAEVVQKSDVVFLAVKPVHVSKVASEIAPAKEHLVVSIALG............................................... 97
10 -12.200PF03721.14; UGDH_CAEEL/10-205; UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain  ali follow..  12  3VVCVGAGYVGGPTCAMIAHKCPHVTVVDMNTAKIAEWNSDKLPIYEPGFAARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQ............................................ 114
11 -11.500PF06690.11; D7DUD4_METV3/2-259; Protein of unknown function (DUF1188 topsan)  ali follow..  10  44AIIFGAYLSGNYIANTLKADCGEVILIDSQPHLEDIVTGNGIKFMDLNTFMLKLRNNKDKEINPD--------LIIDVTGLGGVDPNMLKDFDPKVLIIEDPSFDKELMEADNTHKRLCVGHKKGSLKTFRSSKISKTSGTMTLT.... 182
12 -11.100PF13460.6; G2TRC2_BACCO/7-191; NAD(P)H-binding  ali follow..  16  1....GAGKIGKILVDLLQKSDRHIRAMVRKEEQAQFFRQKGVDAVLSD-------LEGTDELAEAAKGCDIVFTAGSGGHTD-----KTLAVKTMEAAEKAGISRFMIVSALQANH................................. 101
13 -11.100PF00056.23; MDH_CHLAA/3-142; lactate/malate dehydrogenase, NAD binding domain  ali follow..  11  3ISIIGAGFVGSTTAHWLAAKELGDIVLL--DFVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSNADITRACISQAAPLPNAVIIMVNNPLDAMTYLSGFPKERVIG.............................. 140
14 -10.600PF02737.18; Q2YR99_BRUA2/5-183; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain  ali follow..  14  2VGIIGAGQMGSGIAHVCALAGYNVLLHDAAPDRLEKVASGKLQEEQRADAMKLIRP---ANSMEDLAGVDLAIEAATE---RKIFAQLCPVLNPEAILATNSISITRLASTTDRPERFIGI............................ 135
15 -10.000PF13380.6; B9JVC9_AGRVS/19-138; CoA binding domain  ali follow..  10  3IALTGASPPSHGVMHFLLNHGYRV-----------------IPVNPGQAGKDILRQTVFASLGDIPEPVDMIDVFRASEYLPAVVDEALGLHLPKVIWAQLGVRDDQAAARAEAAGI................................ 107
16 -10.000PF01266.24; Q89E97_BRADU/6-350; FAD dependent oxidoreductase  ali follow..  16  2AIVIGGGIHGCSTTLHLCLAGLKPVLIEKDYAGRHAFESHGVLVAENEDELAVCRARVAELNALGFTHEELI----DATELRRLVPAVAETCPGGVVSRRDGVREGVAASNIRYSDGLWYVDVGSDTYAAPVLVNAAGAWAGKIAAALG 208
17 -9.990PF13738.6; E4RQY1_LEAB4/3-286; Pyridine nucleotide-disulphide oxidoreductase  ali follow..  13  1.VIIGGGPIGMACGIECKKAGLDYVILEKGCLVNSLYHYPTTMTFFSTSERLELDNIPFVSNSAKPTRAEALVSDVYKVEKGFEVKTSKRTYSAEKVILATGFYDIPNLLGIPGEDLKVKHYYKDPHFYAFQKIVVIGANNSAV..... 162
18 -9.880PF05834.12; LCYB_ARATH/84-479; Lycopene cyclase protein  ali follow..  21  2LAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPK..................................................................................................................... 33
19 -9.530PF05221.17; D9SB20_FIBSS/15-498; S-adenosyl-L-homocysteine hydrolase  ali follow..  11  259AVVCGYGDVGKGCAQSLRGQGARVIITEIDPICALQAAMEGYEVKTLDEVVSYADIGIISAAQMEKMKNRAIVGNIGHFDNEIDMAGLKKIPGHSILVLAEG............................................... 386
20 -9.440PF00899.21; SAE2_HUMAN/11-443; ThiF family  ali follow..  17  10VLVVGAGGIGCELLKNLVLTGSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLI.................................................... 127
21 -9.330PF01494.19; TCMG_STRGA/16-391; FAD binding domain  ali follow..  18  4VLIVGGGLTGLSAALFLSQHGVSCRLVEKHRGTTVLTRASGISSRTME..................................................................................................... 51
22 -9.280PF02056.16; CHBF_ECOLI/6-188; Family 4 glycosyl hydrolase  ali follow..  13  2VVTIGGGSSYGFIKRYHELPVSELWLVDVEGGKPKLDIIFDLCQRMIDNAGVPMKLYKTLDRREALKDADFVTTQLRVGQIFDIVKDVEELPNAWVINFTNPAGMVEAVYRHTGFKRFIGVCN.......................... 168
23 -9.070PF00208.21; DHE3_ORYSJ/176-408; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase  ali follow..  11  34FVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTGAI--RNKSGIDIPALGSLEDFYGAEVMDAAELLVHECDVLVPCALGGVLNR--ENAAEVKARFIIEGANHPTDTEADEILAKKGVIVL----------PDIYANSG........... 164
24 -9.000PF01488.20; HEM1_PSEAE/169-304; Shikimate / quinate 5-dehydrogenase  ali follow..  12  15ALLIGAGETITLVARHLFEQGKRIVVANRTLERASLLAEQ--------------HAVLLSEIPEELANSDIVISSTASLGKGAVERALKQRKHKPMFMVDIAV.............................................. 111
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.