current user: public
If you have questions about the server, please let us know.

Query: PF02673.18; UPPP_VIBTL/6-259; Bacitracin resistance protein BacA, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250
# Score Template Links and tools%idFirst AFMLALVQGFTEFLPISSSAHLILPSAVLGWEDQGLAFDVAVHVGTLAAVVIYFRKEVVSLLSAFFGSVFKGDRSKEAKLAWMIILATIPACIFGLLMKDIVELYLRSAWVIATTTIIFGLLLWWVDKNSSLRDDEYQAGWKKALFIGLAQAMAIIPGTSRSGATITAALYLGFTREAAARFSFLMSIPIITLAGGYLGLKLVTSGDPIHVGTLLTGIVVSFISAYICIHFFLKLISRMGMTPFVIYRLILGFGLast
1 -118.000PF02673.18; UPPP_VIBTL/6-259; Bacitracin resistance protein BacA  ali  100  1AFMLALVQGFTEFLPISSSAHLILPSAVLGWEDQGLAFDVAVHVGTLAAVVIYFRKEVVSLLSAFFGSVFKGDRSKEAKLAWMIILATIPACIFGLLMKDIVELYLRSAWVIATTTIIFGLLLWWVDKNSSLRDDEYQAGWKKALFIGLAQAMAIIPGTSRSGATITAALYLGFTREAAARFSFLMSIPIITLAGGYLGLKLVTSGDPIHVGTLLTGIVVSFISAYICIHFFLKLISRMGMTPFVIYRLILGFG 254
2 -7.710PF13139.6; Q81VL6_BACAN/13-127; Domain of unknown function (DUF3981 topsan)  ali follow..  17  1..........................................................................................................................................................LIPWTRRSGSKLRAVDKKGDEKVVKGKKSSILVIPVLFWIGIAIYEYFWLIDDRADSILTHYSVAVAILIGLVTLKGLLMFVLLASYGYFGY........ 104
3 -7.570PF01925.19; A9CIG5_AGRFC/14-267; Sulfite exporter TauE/SafE  ali follow..  12  2.AAAGVVAGLLAGLFGIGGGAVLVPVFYHVFGLLDVPEAVRMHLSLGTSLAIIVPTSVRSFLT------HRQKGAVDIDLLKGWIVAVPLGTILASVVAAYASSVALRL-IFAFIALALAFRMIVNRASWQLGSDLPKNPAR-GTGIGLLSGLM---GVGGGVMNNTFMTLYGRTIHQAVATSSGVGVLISLPGLLGYIWAGWGNAGLINWIAVVLLIPITLLVAPYGVRLAHALSKKQLERAFGVFLVFVAA. 252
4 -6.530PF05297.11; LMP1_EBVB9/1-386; Herpesvirus latent membrane protein 1 (LMP1)  ali follow..  22  20..............PLSSSLGLALLLLLLAL----VLYSFALMLIIIILIIFIFRRDLLCPLGALC-----------------ILLLMITLLLIAL-------NLHGQALFLGIVLFIFGCLL----------------------VLGIW--IYLLEMLWRLGATIWQLL--------AFFLAFFLDLILLIIALYLQ........................................................ 161
5 -6.420PF03773.13; Q9X092_THEMA/31-364; Predicted permease  ali follow..  18  12...................................................................................AREHVLLCLVPAFFIAGTISVMLKKDAVLKLL----------------GPNAKRIISYPVAAISGGILAVTILPGIYKKGAGIGPAT------------TFLFAGPAINIAAIFLTARVL--GWDLGLARLIATITAAVLIGLIM.......................... 132
6 -6.280PF05758.12; TI214_VITVI/21-949; Ycf1  ali follow..  16  2VVVVGLYYGFLTTFSIGPSYLFLLRAQVMEEGEEGTEKKVSAITGFITGQLMMFISIYYAPLHLALGR--------------TITVLALPYLLFHFFWNNHKH---------------------FFDYGSTTRNSMRNLSIQCVFLNNIFQLLFILPS------SMLARLVNIYMFRCNNKMLFVTSS--------------------------FVGWLIGHILFMKWVGLVLVWIRQNP.............. 179
7 -6.200PF03176.15; MMPL5_MYCTU/63-393; MMPL family  ali follow..  8  120.............VKVYVTGSAALVADQQQAGDRSLQVIEAVTFTVIIVMLLLVYRSIITSAIMLTM----------------VVLGLLATRGGVAFLGFHRIIGLSTFATNLLVVLAIAA-IFLIGR------------YQEARGLGQDRESAYYTMFGGTAHVVLGSIAGATFCLSFTRLPYFQTLGVPLA----------------------IGMVIVVAAALTLGPAIIAVTSR................ 301
8 -6.090PF15912.5; F1QA29_DANRE/6-262; Virilizer, N-terminal  ali follow..  8  5.........................................................................................................................LLFLDKHQNAELTNVDVVRFPYGVLI---TEVRVIPPGIKAHSNLPDSRAFGETAPHAFQLDLFFNNVSKPNSPVFDRLGSLEYDENKS---IIFRPNGKINTDGLVLR........................ 109
9 -5.860PF12139.8; I4C3L3_DESTA/64-144; Adenosine-5`-phosphosulfate reductase beta subunit  ali follow..  14  1......VRGYADFVPMGASVVPL--------GSEDIMWTVKFRSGMIKRFKFPIRTTPEGSAKPDGGFGEVTPDLASQCLYNALKLDALPT................................................................................................................................................................... 81
10 -5.800PF11449.8; Q7MLP7_VIBVY/40-402; Putative, 10TM heavy-metal exporter  ali follow..  16  2............................................................................................TRQITVTTLSDSFWAVSCYVAATLAIYHYLSGFMSRTNRVTQLYRASRHYQVFFAAL---LGALPGC--GGAIVVTTQFI------SGRVGFGAIVAVLTSTMGDAAFLLLAAKPVTGLGVIALGIAVGTLSGMVV.......................... 126
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.