Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF02683.15; O66942_AQUAE/8-266; Cytochrome C biogenesis protein transmembrane region, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .
# Score Template Links and tools%idFirst AFLGGLLSFLSPCILPIIPAYLSYISGVGVSDVETQKGKVNWKVFFSALYFVLGFTLVFTGLGASATFVGQLLHDYQEWIIRVGSGLVIFFGLHFAGVFLWKHFLKVYIPIGILIPVLYFLKLLSWNEFFNLMFAYAVVLILYLVKAHEFLYRQLKIEAKAEISYLGAFLMGVVFAFGWSPCIGPVLGSILFLASQQETVAKGALLLFVYSIGLGIPFLLAGLLFSLFLNFVRSFSRYFKYVEIAGGVLLVSLGLLLALLast
1 -98.100PF02683.15; O66942_AQUAE/8-266; Cytochrome C biogenesis protein transmembrane region  ali  100  1AFLGGLLSFLSPCILPIIPAYLSYISGVGVSDVETQKGKVNWKVFFSALYFVLGFTLVFTGLGASATFVGQLLHDYQEWIIRVGSGLVIFFGLHFAGVFLWKHFLKVYIPIGILIPVLYFLKLLSWNEFFNLMFAYAVVLILYLVKAHEFLYRQLKIEAKAEISYLGAFLMGVVFAFGWSPCIGPVLGSILFLASQQETVAKGALLLFVYSIGLGIPFLLAGLLFSLFLNFVRSFSRYFKYVEIAGGVLLVSLGLLLAL 259
2 -21.600PF13386.6; D3EJT1_GEOS4/10-208; Cytochrome C biogenesis protein transmembrane region  ali follow..  15  2VALAGLMGAPH-CL------------VMCGGIVSSLALGNQSSPLKSVLAYNAGRVITYMAIGGFMGVVGSFLDVAGSFVGFQGAASIIGGMLILLWTIRRYTLPIYNAHL-----------------------------------PRHPFFQAKLARLGQRYEMLATFLTGILLGFL--PC--GLTYAMQMNAAASGSGLEGIMIMLVFGLATFPILFVVAMSAGSLTKKWRR------GMRKFGGFLAFLMGIL... 199
3 -12.200PF09948.9; B4EK64_BURCJ/68-260; Predicted metal-binding integral membrane protein (DUF2182 topsan)  ali follow..  16  8.....MIAMMTPGAAPLVMLY---------RRVLRQHGDGATGSAFTSVALLTGYLTTWLAFSIGAALLQALLQPAWSKSARLSAIVLALAGLYQFSPLKRACLRQCRAPAAFLVAH--------------------------------------------RPGVAGSFLLGVRHGI----CVG------------------WLLMALLFVGGVMNVVWIVAL---SLFVFVEKVLPGGERIGRVLGVVLIAWAGA... 192
4 -11.300PF01914.17; YCHE_ECOLI/8-210; MarC family integral membrane protein  ali follow..  16  6KFFIGLFALVNP--VGIIPVFISMTSYQTAAA--------RNKTNLTANLSVAIILWISLFLG---DTILQLFGISIDSFRIAGGILVVTIAMSMI-------------------------------------------------SGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGP----AISSTIVWGTRYHSISYLFGFFVAIALFALCCWGLFR-MAPWLVRVLRQTG--INVITRIMGLLLMALGIEFIV 196
5 -10.700PF03824.16; HOXN_CUPNH/48-338; High-affinity nickel-transport protein  ali follow..  13  8AYGLGLRHAVDA--------HLAAIDNVTRKLMQDGR-----RPITAGLWFSLGHSSVVVLASVLIAVMATTLQERLDAFHEVGSVIASALFLFAIAAINLVILRSAYRAFRRVRRGGIYVEEDFDLLFGNRGFLARIF----------------RPLFRFITRSWHMYPLGMLFALGFDTATEVALLGISTMEASRGVPIWSILVFALFTAGMALIDTIDSILMCGAYAWAYAKPVRKLYYNMTITFVSAIVALIV.. 240
6 -9.910PF01810.18; RHTC_ECOLI/13-206; LysE type translocator  ali follow..  13  1.....IVALMSP------PDFFFVS--------QTAVSRSRKEAMMGVLGITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQML------------------------------------------------RGALKKEAVSAPAPQVELAKSGRSFLKGLLTNLA-NPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVETLAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLII 192
7 -9.140PF11139.8; A0QQE7_MYCS2/12-220; Sap, sulfolipid-1-addressing protein  ali follow..  18  5....AMVVALSP--LSIIPAVLVLQT---------------PRPRPTGLAFLGGWLVGMAALTALFIEVSNLFGRLDK--PVWASWLRIVLGTALIIFGVYRWLNRSKAAHTPK------------------------------------------MQSMGKLTPPRAGVTGVVLTIVNPKVLFICAAAGLAIGSAGLGQPQVWAAAIWFSSTVALPILAYAVSGSKLDPTLARLGEWMER-AVLVAVILVVIGLLVL. 204
8 -7.490PF05210.13; B0W1L9_CULQU/144-248; Sprouty protein (Spry)  ali follow..  32  74.IGLALLSLLVPCLWCYPPLRACHWIGVS...................................................................................................................................................................................................................................... 101
9 -7.450PF05758.12; TI214_VITVI/21-949; Ycf1  ali follow..  15  2VVVVGLYGFLT--TFSIGPSYLFLLRAQVMEEGEEGTE----KKVSAITGFITGQLMMFISI-------------------YYAPLHLALGRPHTITVLALPYL---------------------------------LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQL-LNHFISSMLARLVNIYMFRCN--NKMLFVTSSFVGWLIGHILFMKWVGLVLVWIRQVSELRNSMARIFSILLFITCVYYL. 217
10 -7.350PF08008.12; Q98825_CSIVT/36-118; Viral cysteine rich  ali follow..  12  9..................................................................................................................................................................................YQPCIESTKPCCRLEDRTSVQFGRKEYICDRFFGGLCAPL-----------DVINNLTLYKELSAQL.............. 64
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.