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Query: PF02720.17; Q73VY1_MYCPA/38-363; Domain of unknown function (DUF222 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LRALERMEASRRRQIAVSHGVIAGLAGEGPGNVGGPVHKVIADRLRISYAEACRRLREAKQLSPRLTLTGQELPPELPATAGVWREGMLDGQHLRVIEKFVRDLPETTPVRALEEAERFLAHQATLLRPDQLEKVAHQCALRINPDGKFSDADRARQRGFTWCGQRADGMSFGKLWASPELRANLDAWLARFAAPGMCNPDDEAPCVAGEPDEESATKDSRTPAQRQHDALNALLRGRLGDPKLGLHNGLPVTVVVSTTLRELTTGAGRAVTGGGTLLPMRDVIRMARHAYHYLAVFDEHSSRPLYLGRSRRVASPDQRVVLYAKDLast
1 -128.000PF02720.17; Q73VY1_MYCPA/38-363; Domain of unknown function (DUF222 topsan)  ali  100  1LRALERMEASRRRQIAVSHGVIAGLAGEGPGNVGGPVHKVIADRLRISYAEACRRLREAKQLSPRLTLTGQELPPELPATAGVWREGMLDGQHLRVIEKFVRDLPETTPVRALEEAERFLAHQATLLRPDQLEKVAHQCALRINPDGKFSDADRARQRGFTWCGQRADGMSFGKLWASPELRANLDAWLARFAAPGMCNPDDEAPCVAGEPDEESATKDSRTPAQRQHDALNALLRGRLGDPKLGLHNGLPVTVVVSTTLRELTTGAGRAVTGGGTLLPMRDVIRMARHAYHYLAVFDEHSSRPLYLGRSRRVASPDQRVVLYAKD 326
2 -6.350PF11300.8; L0F544_DESDL/8-135; Protein of unknown function (DUF3102 topsan)  ali follow..  10  9.EINMIVHQTKKILLTNAIEIGRRLKEAKSLVEHGEWGKWLEESVSYSQSTACRLIRICEEYGASLP----------DGSGTSNLAPVPNLTYTQALL--LLGLPEGEREEFIAKND------VATMTKQELQQALRD............................................................................................................................................................................................ 127
3 -6.190PF18471.1; G8ZQ43_TORDC/135-370; Ribosomal L27 protein C-terminal domain  ali follow..  9  5.QAAQEEQFLPRKKALAKDEILKNLSEREERRNIQEFVKTLTESLKLDIKDTKYLIRLRSCLKSGFSLEDAQFNAKY-ETKLKSKRESWGSEKLAEQLQVLQDTTSLLNESTSFNNKLSLIKY---ITSAEKLALKQKLIDDLKEKTIVTKKDRDEVRKLF..................................................................................................................................................................... 170
4 -5.450PF03677.13; D6YTD9_WADCW/1-238; Uncharacterised protein family (UPF0137 topsan)  ali follow..  4  76.AITSEVKAINHQAALLHGERIKKAQRVLTNYQEGAFTSWL-IAAYGNRQTPYNFLQYYEFYSLMPKGLHPQIE-------------AMPRQAVYTL----------ASREGELEKKQQIVENYNGETKSEVLHLIRETFPLEDHDKRRRNIGESTINS---LYRLIQNVKSRNARITKSQKNAIFEMIDE....................................................................................................................................... 238
5 -5.390PF04344.13; E0SIM0_DICD3/15-214; Chemotaxis phosphatase, CheZ  ali follow..  12  2.EIISRIGQLTRMLRDSLKELGLDQAITEAAEAIPDARDRLDYVVQMTAQAAERALSCVEAAQPRQN-ESKSLKVRWDQWFENPIELSEARELVTDTRNYLESVPDHTAFTNAQLLEQDLTGQVIKRMMDVVQEIEKQLLMVLLENIPEKPSETRRANEGLLNGPQVDKTAAGIVSNQDQVDDLLDSL.......................................................................................................................................... 198
6 -5.190PF04675.14; I1LR88_SOYBN/161-337; DNA ligase N terminus  ali follow..  7  38.......EDLVKVVYLSANRIAPAHEGMELGIGDASIVKALAEAYGRTEVWIKTQYQKKGDL-------GLVAKESRSSQPMMFKPEALTITK---VFNTFRLIAKESGKESQEKKKNHIKALLVAATDCEPQYLIRLLQTKL....................................................................................................................................................................................... 163
7 -5.110PF12247.8; E4ZZ59_LEPMJ/309-398; Temperature dependent protein affecting M2 dsRNA replication  ali follow..  15  6..................................................................QYLGQRLPDEL------MSKGLIAPRILQWRTTCEVFEVPPMDGGESLEYKNLVSSKLIPLRTTAFNLLSSTL........................................................................................................................................................................................... 75
8 -5.020PF05309.11; R5E316_9BURK/1-182; TraE protein  ali follow..  13  5.EYTTEISARLALRSFFIYAFAASL-----------IVNLILAFGLIVLDKKDRVVVLPAEITKSFWLDANGVSPEYLEQMGLFALQLALNNSPETFEHNQRKLLQYVSPERRGATEVFLTAQGRRMKSANASVHMLPEAVETRAS.................................................................................................................................................................................... 138
9 -4.950PF17134.4; D4ILT4_9BACT/190-303; Domain of unknown function (DUF5109 topsan)  ali follow..  15  22..................................................................................AFQDGHVAYDELVDFLKVNKKLADRYGLECWTNSETFDRDMPIKFLPIKWEKLRLKMGLAAQA..................................................................................................................................................................................... 84
10 -4.830PF10145.9; M9X478_MANHA/208-421; Phage-related minor tail protein  ali follow..  9  1.........................................QKAVSVGGGSKEEALSSLDALLASGAVSTETALNLLPTLQKGAVATGASANDMAQIAISSMQ---GIKEEDIGRVLDMAVAAGQSFELADMASWLPQQMAAAKQAGLSGIEGFERLLIANQQARVTAGT-------SNEAGNNLVNLLGKITAKETNER.............................................................................................................................. 153
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;