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Query: PF02914.15; TRA_HAEIN/267-485; Bacteriophage Mu transposase, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VAMLQAMEWINGDGYQHNVWVRFPDGEIKRPKTWLWQDVRTRKVLAARTDKSENTDTIRLSLLDVISRYGLPKHLTIDNTRAAANKKMTGGVKNRYRYQVNENEVQGIIPALGIELHWTSIQFGKGRGQAKPIERAFSHGGLGDYVDKHLLLRGAYAGANAYEKPDYDGKNGAEQPVDYATFLMALEQGIQQWNNVGNRLTEICAGKSSYAEAFERDWALast
1 -103.000PF02914.15; TRA_HAEIN/267-485; Bacteriophage Mu transposase  ali  100  1VAMLQAMEWINGDGYQHNVWVRFPDGEIKRPKTWLWQDVRTRKVLAARTDKSENTDTIRLSLLDVISRYGLPKHLTIDNTRAAANKKMTGGVKNRYRYQVNENEVQGIIPALGIELHWTSIQFGKGRGQAKPIERAFSHGGLGDYVDKHLLLRGAYAGANAYEKPDYDGKNGAEQPVDYATFLMALEQGIQQWNNVGNRLTEICAGKSSYAEAFERDWA 219
2 -15.400PF00665.26; P71644_MYCTU/136-254; Integrase core domain  ali follow..  15  27...............................RTLTMTDLVTGWTENASI-RNNAAKWILEGIKECQQRFPFPTVFDSDCGGEFINHDVAG-----------------WLQARDIAQTRSRPYQKNDQAH---VESKNNHV............................................................................... 115
3 -10.800PF13358.6; D3VKI2_XENNA/117-263; DDE superfamily endonuclease  ali follow..  14  1.......PLLFRDAVPPSP-VAETTGSRTRLNLMGALNLQQIEETVIREYPTINAKNVVLFFGAIRETYPLSQHLILDGAGYHRSEIVKF-----------------FAEVLNIELHYLPPYSPNLN----PIERLWKYANEQIRNNVYFP.................................................................... 141
4 -8.620PF13610.6; Q6LW75_PHOPR/74-213; DDE domain  ali follow..  10  1.......SSWQLDETYVKV-----KGK----YLYRAIN-KQGETLDFYFSHKRNKEAAYQFLRRCLRYYDLDNQPKTLNTDKHSSYANAIARLKKEGRLRAD-----------VEQRQVKYLNNGIESDHAPIKKLVVATGGFKIRKRAWSTIQGFESFRMLNKGQ..................................................... 140
5 -6.620PF03400.13; Q32H87_SHIDS/20-150; IS1 transposase  ali follow..  9  6...............EMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFG--ERTMATLGRLMSLLSPFDV-VIWMTDGWPLYESRLKGK-------------------------------LHVISKRYTQRIERHNLNL---------------------RQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ....................... 131
6 -6.560PF18821.1; A0A1Y0NFS2_9BURK/747-843; Large polyvalent protein-associated domain 7  ali follow..  12  24.................................ALVIDSGQRV----TVAAAKDSQAVETGLRLAVQKFG--PGLKIEGSDEFKRQVIEAALKTGLRVEFDSKAMNDELTRR........................................................................................................... 96
7 -6.240PF17687.1; Q3TE80_MOUSE/179-283; Family of unknown function (DUF5535 topsan)  ali follow..  11  1...MTVLEAVMEIQTIADVGLLWRQSHPGRTKLMLGPNPTRKDLLGWLLSHGVPREQVDRQPTKVLLE------LYIKEAKRSRGH..................................................................................................................................... 77
8 -6.190PF13683.6; Q7DB06_CAUVC/199-265; Integrase core domain  ali follow..  9  2................................................................................................................RVAWHYIAPGKPTQNG----VESFNGRMRDELLNETLFF--------------------------GLDHARQKLAAWAEDYNTRRPHSS---IGYQTP......... 67
9 -6.170PF07449.11; Q8ZP25_SALTY/10-116; Hydrogenase-1 expression protein HyaE  ali follow..  8  2WQRLLTRGWQPVEASTVDDWIKRVGDGVI-SDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGK.......................................................................................................................................... 93
10 -6.130PF18330.1; G7WM79_METH6/247-371; Ligase Pab1020 C-terminal region  ali follow..  8  1....................................................................YAFR--YYNDYGQDFFFSRVVREGFQAAEWAEGEAEFLERCLRLGRSMLTPMRETVEAKMVGEPIVQEVEILVRDL--QTARDFEEHFRRMGVRAIFDPPRNSRGGHLVKIKRLVLSTNDKTESI.......................... 121
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;