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Query: PF02984.19; Q4DWL9_TRYCC/229-371; Cyclin, C-terminal domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst PTPFPFIVRLLSVMEGLVHSGSLSEDYTLQLPLLRHTALFFLEHGMLDYKCLRFKSSQQANASLFLALVTLRIKQKGGSCSFAGETIWTRQLQHYSRAKVHDFKACAEAILEFVNYVPTTKYQAVRRKYSSAKYGEVAKLIMPLast
1 -86.600PF02984.19; Q4DWL9_TRYCC/229-371; Cyclin, C-terminal domain  ali  100  1PTPFPFIVRLLSVMEGLVHSGSLSEDYTLQLPLLRHTALFFLEHGMLDYKCLRFKSSQQANASLFLALVTLRIKQKGGSCSFAGETIWTRQLQHYSRAKVHDFKACAEAILEFVNYVPTTKYQAVRRKYSSAKYGEVAKLIMP 143
2 -7.910PF16899.5; R7YVJ7_CONA1/187-323; Cyclin C-terminal domain  ali follow..  23  65.................................YALASNILKDSALLTDAYFHYTPSQVMFASLYLA............................................................................ 98
3 -6.680PF17535.2; Y210A_MYCGE/1-219; Family of unknown function (DUF5454 topsan)  ali follow..  11  44...IKFIKKYGPECEKSFLSWQSKAKSDVYSELTNKIKKQQFSEQLIY--QLVQLDALRTNYLI-TQRKLLKRSWKNAKKEGYTKQEWLMILVQLYDHSRQEILDLTEVIKKLYLKTETNNDKLEFAATTSKTTAQLTKTMP. 198
4 -6.470PF13182.6; F6CN35_DESK7/17-303; Protein of unknown function (DUF4007 topsan)  ali follow..  11...YGWLKKGYDAVIQDGNVFKASDAIERLGVMVSSIRFWCQAFKLIELDDNGWDPFLEDVASLWLLHWQLFVPRLEAVS-------WTLAFNKCNLFDIKQLTKVIFSAATISENSFERDASCIIRMYADVPLEKESEIECP 171
5 -6.440PF12553.8; A9IG31_BORPD/1-121; Protein of unknown function (DUF3742 topsan)  ali follow..  15....RSVGRGWRAYARGERRLSCWLASKGMPLAGATVLVWVVKLVAL---------GLLFYAAFWLALVLLASNSTVDDDRWTQPDELRNGEAGFGLYSSSGQR....................................... 113
6 -5.850PF11047.8; SOPD2_SALTY/1-319; Salmonella outer protein D  ali follow..  1......................................................MPVTLSFGNRHINHSRLARLMSPDKEEALYMGVWDRFKDCFRTHKKQEVLEVLYTLIHGCERENQAELNVDITGMEKHAFTQLKEYANP 93
7 -5.800PF00382.19; TF3B_KLULA/193-266; Transcription factor TFIIB repeat  ali follow..  18  1......IQHFAEKLELGDKK-----------IKVIRDAVKLAQTMSRDWMYEGRRPAGIAGACLLLA............................................................................ 50
8 -5.740PF13926.6; B6H420_PENRW/282-415; Domain of unknown function (DUF4211 topsan)  ali follow..  11  13............VPTEEIPFEFTRHAYKQPKEYFRDVIGWMVQNKL---------PAFPRSDDMYKAFMKLEDEVKGRAGSQLISSVWNPALQARPHIDISAFPTEENHPCDACRRSGHPASSDIKKAYSLQTL......... 134
9 -5.670PF02485.21; Q9SY70_ARATH/144-371; Core-2/I-Branching enzyme  ali follow..  151..................................RKIAIYIISDSKYYSLFKQFCRPACYPDEHYIPTFLNMFHGSMNANRSVTWVDWSIGGPHPATYAAANITEGF.................................... 223
10 -5.490PF10034.9; H9G3T3_ANOCA/57-723; Q-cell neuroblast polarisation  ali follow..  515............................................ELMNWIKSSTPKKAVIAGSMQLLAGVKLCTGRV--------------LTNHPHYEDKSLRERTKQVYQVYAKRSPEDVHRILRSFGTDFV......... 590

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35