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Query: PF02998.14; Q9W959_9RETR/2-87; Lentiviral Tat protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .
# Score Template Links and tools%idFirst NEEAPQRREIHQEDLVRDIWERERDAWQWISVRAPGEVLQRWLAMLKSGRNRKRVLREMQKLMWRYPKAPVIRPCGCRLCNPGWGTLast
1 -77.500PF02998.14; Q9W959_9RETR/2-87; Lentiviral Tat protein  ali  100  1NEEAPQRREIHQEDLVRDIWERERDAWQWISVRAPGEVLQRWLAMLKSGRNRKRVLREMQKLMWRYPKAPVIRPCGCRLCNPGWGT 86
2 -6.850PF00317.21; Q99BK3_9ALPH/138-224; Ribonucleotide reductase, all-alpha domain  ali follow..  16  1AERGFQSALKLEEFYLKRLPGDYKESVIQLYTRIAGHLACRSEGMCRVALGREGSWMDMFEYFFNNPATPAMLNLGTTGC...... 87
3 -6.570PF17389.2; Q5LID7_BACFN/462-794; Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain  ali follow..  14  272..........YAETAYRMLTKTTLPSWGYWIKEGATSLYETWDVTRRIGDASLNSMGAVSAWMYKYP................... 330
4 -6.320PF02837.18; BGAL_KLULA/32-204; Glycosyl hydrolases family 2, sugar binding domain  ali follow..  14  15..........APLDAPDAKNLDWETAKKWSTISVPS----HWELQEDWKYGKPIYTNVQYPIPIDIPNPPTVNPTGV......... 77
5 -6.070PF03400.13; Q32H87_SHIDS/20-150; IS1 transposase  ali follow..  5  5.........AEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSP......................... 56
6 -5.590PF16998.5; B9JAN2_AGRRK/36-151; 17 kDa outer membrane surface antigen  ali follow..  10  26VTADSVSDETTVRNAVTSADLHKLNPVPWAN---ASTGSAGVIDTIVENSASGQVCRQFRTTRHSYQGIANFSGRTCLLGQGEWQL 110
7 -5.590PF13312.6; C7MYB0_SACVD/48-154; Domain of unknown function (DUF4081 topsan)  ali follow..  17  47...........................TCSSLVGPADQVLGLWDELVGEWGPAREVRPDQPLMALDTAPSITPDPEVRPVRPD... 102
8 -5.580PF13276.6; Q1WUI0_LACS1/209-271; HTH-like domain  ali follow..  14  5............KAVIKGLFDYYETEYGV---RLSSQIRDYYQLIGKEAPNHKRIQRLMHE......................... 51
9 -5.520PF07056.11; Q8VAE6_WSSVS/117-243; Protein of unknown function (DUF1335 topsan)  ali follow..  15  2.......KSFTFSPLYRILTDRNAAIHNCKYIIVTADLL---MGCGITNNKVEKKLLSMGSILGGESMVPLHDIAGLRIENPIVGS 85
10 -5.500PF03053.14; NS3_PEDV7/1-223; ORF3b coronavirus protein  ali follow..  18  51....................................SVFVYFFALFKASSLRRNYIMLAARFAVVFLYCPLLYYCGALL....... 93
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.