current user: public

If you have questions about the server, please let us know.

Query: PF03181.15; F6HH21_VITVI/115-326; BURP domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210
# Score Template Links and tools%idFirst LFFLEKDLHPSKKLNLHFTKTTSGAKLLPRHVAETIPFSSNEFSDILNRFSVEPGSAEALEMKKTIEECEVPAMEGEDKYCATSLEAMVDYSTSKLGKNVKVMATEVGKEESPQQEFTISPGLTKMVGDKRVVCHGQNYPYAVFHCHASHATKAYLVPMVGADGTKVKAVAACHIDPSKWNPRHLAFQVLKVKPGTVPICHFLPEDHIVWTSLast
1 -123.000PF03181.15; F6HH21_VITVI/115-326; BURP domain  ali  100  1LFFLEKDLHPSKKLNLHFTKTTSGAKLLPRHVAETIPFSSNEFSDILNRFSVEPGSAEALEMKKTIEECEVPAMEGEDKYCATSLEAMVDYSTSKLGKNVKVMATEVGKEESPQQEFTISPGLTKMVGDKRVVCHGQNYPYAVFHCHASHATKAYLVPMVGADGTKVKAVAACHIDPSKWNPRHLAFQVLKVKPGTVPICHFLPEDHIVWTS 212
2 -9.910PF13435.6; C7LUU2_DESBD/35-108; Cytochrome c554 and c-prime  ali follow..  17  4....................................................................................................................................DCHEEQYENFTKYAKKSHSDRS--VKIMASDLTEAATCYGCHATGFGKPGGFVSYEKTPHLADGCEVCH........... 71
3 -8.520PF14196.6; R5VKP4_9FIRM/52-197; L-2-amino-thiazoline-4-carboxylic acid hydrolase  ali follow..  16  85......................................................................................................................................ETYDLGYDYHVC----------CKLCQDEGCPELAAYICRMDYVLAEIMHMKLVRTGTIAEGAPYCDF.......... 144
4 -7.960PF02085.16; Q6XCI5_DESBA/13-115; Class III cytochrome C family  ali follow..  14  28..............................................................................................................................ATVECAQCHHTL---TTSGCHDSLEFRD-AKDIKLVENAYHTQCIDCHKALKKDKKP--------TGPTACGKCH........... 103
5 -7.800PF13447.6; Q60AB1_METCA/169-436; Seven times multi-haem cytochrome CxxCH  ali follow..  15  4................................................................GCIDCHGKVVMPDRTQCGSCHLQEFAEAESEKDQQWPQGQWGKGHPSHAVDWEANVETAEREIAQGCDMCHYQQ---KCDGCHTRHSFSA-------AEARQPEACATCHNGVDH-VPLKDALTKGGYTAPTCQYCH........... 172
6 -7.470PF02335.15; NRFA_BACFN/56-493; Cytochrome c552  ali follow..  13  109.................................................FYNNKWGAFGSEIVNPIG-CAD---------C---------------EPTNMKLHISRPALREAFARQGKDIDKATPQEMRSLVCAQ---------CHVEYYFKGYEISQMGIHAQRGVSCADCHMEGGMKFSDHHIQSPLAMIDRTCQVCH........... 277
7 -7.380PF03347.13; HLY2_VIBPA/25-189; Vibrio thermostable direct hemolysin  ali follow..  12  5..................................SVPFGSDEILFVVRDTTFNTNAPVNVEVNRNVKRKPYKDVYGQSVFTTSGTKWLTSYMTVNINDKDYTMAAVSGYKHGHSAVFVKSDQVQLQHSYDSVA-DEDSIPSKMY----LDETPEYFVNVEAYESGSGNILVMCISNKESFFE.............................. 160
8 -7.370PF00024.26; FA11_HUMAN/110-193; PAN domain  ali follow..  11  1................................................................................CNKDIYVDLDMKGINYNS---------------------------SVAKSAQECQER--------CTDDVHCHFF--TYATRQFPSLEHRNICLLKHTQTGTPTRITKLDKVVSGSLKSC............ 84
9 -7.100PF14522.6; B3EBL5_GEOLS/40-107; Cytochrome c7 and related cytochrome c  ali follow..  20  10................................................................................................................................DKGLGCDM---------CHQQAKKVQANKDFVMESLYQGKYCGACHNGSLAFA-----------SNTRCATCH........... 67
10 -6.980PF13845.6; Q0S9F0_RHOJR/87-314; Septum formation  ali follow..  1.........AGDCLDWTPSNDPQEDR----KDVAKVDCSEEHRFEVAAPLDLSVYPGAEFGPGSRYPGALRFAALRDEH-CVPAVDTYLGQFSSTAGTLLPFAGKVAEQDQSNIWDPGTCIGINQNVPTDPVGCAQ----------HAFEVISVVDLSMPTVEDQDKYLEGVCTQAANEYALRNKTLTLFWDNLGSRRVC............ 228

FFAS is supported by the NIH grant R01-GM087218-01
1 3 8 7 1 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24