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Query: PF03229.13; Q9IZ54_CHV1/1-129; Alphavirus glycoprotein J, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MRSLLFVVGAWVLAAVTDLTPKAALATGANATAGVANATATAGVANATDAEATSPGAAATSAAVVTPPPTDSTQTAETPGPSPPTDFALPLVIGGLCALTLAAMGAGALLRRRCRRAARDRRRVSYLYALast
1 -101.000PF03229.13; Q9IZ54_CHV1/1-129; Alphavirus glycoprotein J  ali  100  1MRSLLFVVGAWVLAAVTDLTPKAALATGANATAGVANATATAGVANATDAEATSPGAAATSAAVVTPPPTDSTQTAETPGPSPPTDFALPLVIGGLCALTLAAMGAGALLRRRCRRAARDRRRVSYLYA 129
2 -8.390PF15395.6; A7MBK5_BOVIN/673-1731; Domain of unknown function (DUF4617 topsan)  ali follow..  15  2MELLATCLSLW-PAPICESSPFSPVGNSQNKIVNSSLETISSVVAQNYESSGTTTTKGIAVVSPLI--SDVNTLSVKDTTSEALPEMVYPVI-GSVCSL.............................. 126
3 -8.260PF03003.16; A16_FOWPN/220-349; Pox virus entry-fusion-complex G9/A16  ali follow..  9  37.........CWLHECTDKSKDRKYLLFDQDVQRTNCKYIGCNINVDTLRLRNSVAELIAKCGGSIAEDTVLGDDSYNKEAKLPSFFSIIPVCIVLLCLFVL............................ 128
4 -8.030PF11831.8; CDC5L_NEMVE/404-656; pre-mRNA splicing factor component  ali follow..  19  1...................TPNMLLSTPYRTPGEGSGSTPRQGMTPRG--AIGTPSQRSVRDKLNINPEDAVMEEYESECPAPSNDFEIVL...................................... 90
5 -7.490PF05283.11; F6ZX51_ORNAN/2-123; Multi-glycosylated core protein 24 (MGC-24), sialomucin  ali follow..  15  25.........................CSGKSYCSDSPSVENCTAENKTEDCSAATTTRPSPTSSSVTTQTTPNATATPVTPSPRKSSFDAASFIGGI-VLVLGVQAVVFFLYKFCKSKERNYHTL..... 122
6 -7.440PF10170.9; F4WF39_ACREC/9-101; Cysteine-rich domain  ali follow..  25  37................................................................................PFSLPNKGEVLVLGADCSICEHAVCLGCSIRRFCSKCAFSNMQ...... 82
7 -7.210PF12148.8; F7ESL3_XENTR/122-308; Tandem tudor domain within UHRF1  ali follow..  18  17.......IGAWFEAHVENVTQKKAQKNGKAYLKGGHSYRETNGNLEHSRENSHAVDTNPSTSYNDILDEDE.......................................................... 80
8 -6.700PF13985.6; YBGS_ECOLI/3-126; YbgS-like protein  ali follow..  42  8...........FLTATLSLASGAALASGAQTNNGQANAAADAGQV-APDARENVAP......................................................................... 53
9 -6.620PF14869.6; R6N218_9BACE/33-159; Domain of unknown function (DUF4488 topsan)  ali follow..  8  1......LNGVWQMCFYRSSSPDVVGELKTSNSLKILSDDGRFTNLVMMQSGAIIIGYGTYKQNSESVYTEYVEKNLHLPQ................................................. 74
10 -6.590PF07617.11; L0DJG2_SINAD/4-157; Protein of unknown function (DUF1579 topsan)  ali follow..  19  6HRWLDKLVGEWTSEFECRMGPDEP----TMKSQGVEVVRSLGGLWIVGEGEGEAPDGNTSK.................................................................... 62
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.