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Query: PF03336.13; V006_FOWPN/11-355; Poxvirus C4/C10 protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst QLAVHRFTETRFTSFKKELLVNLGISDLNDIKNICEDSKIFFPEKRTELLSIKDRKSKQIVFENSLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFARHRDFSTVFSKNIICVHLLLYLEQPETGGETVIYIDNNTSVKLKTDHLFDKTIEHESITVESGRKCVALFDVLLEKKLSASTNVIGSIEYLGKKINLYDRENDLQLCYCDMVIERMTEDKEYSLGMISDRSGRCIKSHHNGSIVRYRKEEYGSFDALCIYNMNEVDEIWTGDKKHIIWSTIDKKTGTSFIPIDPVLYEKLKAISSKEHKEYKDLRGFCNSRTEYICCSVSKYYFDLPTLast
1 -133.000PF03336.13; V006_FOWPN/11-355; Poxvirus C4/C10 protein  ali  100  1QLAVHRFTETRFTSFKKELLVNLGISDLNDIKNICEDSKIFFPEKRTELLSIKDRKSKQIVFENSLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFARHRDFSTVFSKNIICVHLLLYLEQPETGGETVIYIDNNTSVKLKTDHLFDKTIEHESITVESGRKCVALFDVLLEKKLSASTNVIGSIEYLGKKINLYDRENDLQLCYCDMVIERMTEDKEYSLGMISDRSGRCIKSHHNGSIVRYRKEEYGSFDALCIYNMNEVDEIWTGDKKHIIWSTIDKKTGTSFIPIDPVLYEKLKAISSKEHKEYKDLRGFCNSRTEYICCSVSKYYFDLPT 345
2 -21.100PF09859.9; Q98JN4_RHILO/75-246; Oxygenase, catalysing oxidative methylation of damaged DNA  ali follow..  17  60...........................................................................................RPTPLLLQYVPGDFNCLHQD---LYGDLAFPLQVAILLSEDFTGGEFALTEQVHNRPVQGTKGNYRVNLRHGVSRLRSGMRHTVGIIFH..................................................................................................................................................................... 170
3 -19.400PF13661.6; W5JJA0_ANODA/162-265; 2OG-Fe(II) oxygenase superfamily  ali follow..  18  2...............................................................................................SCSMYNAGDYLLVHDDLL-----SDRRIAYVFYLSRESDGGALLFRADDRIFPRNNQLVLFRVCEKHQVGEVTVYPRLTINGWFH..................................................................................................................................................................... 91
4 -16.900PF13640.6; B4RGC0_PHEZH/142-243; 2OG-Fe(II) oxygenase superfamily  ali follow..  18  3................................................................................................FHQILAGGKLAIHADFIHPVTQLYRRVNLLLYLNEGWEGGDLELWNRQRIAPLFNRTVVFTDVSFHGHPEPMTCPPDKVRRSL...................................................................................................................................................................... 97
5 -13.100PF05721.13; Q92PC6_RHIME/55-292; Phytanoyl-CoA dioxygenase (PhyH)  ali follow..  10  19EICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPGANDRIWNSLEKHCLKNPENFAAYYGNAIIALVSEAWLGPNYQMTAQV-GASQSPHRDYHLHRLSPVLTLQGAVAHCDPVESGPTLFLPYSQLPLEKGDVVFFNPALFHAAGSNRSAGI............................................................................................................................................................................. 235
6 -11.100PF13759.6; Q1GR96_SPHAL/97-197; Putative 2OG-Fe(II) oxygenase  ali follow..  11  4................................................................................................VNILKPGGTHSGHI-------HPHSIVSGTFYVAVPPGSGALKLEDPRLAEPAAGRVFLWESWLRHEVMPHAGKGERISIS........................................................................................................................................................................ 99
7 -10.700PF05118.15; A2SI92_METPP/69-223; Aspartyl/Asparaginyl beta-hydroxylase  ali follow..  15  1....................QANWQTIRDEALKLNDEGQIRAAASYNDIGFNSFFRTGWKRFYLTWYGKELSSANALCPQTVAL-LKSIPSIKAAMFASLPPGATLVRHRDPY------AGSLRYHLGLTTPNDPGCFIEVDGQRYHWKDGEVVMFDETFIHHAANETQQQRVVLFCDV...................................................................................................................................................................... 152
8 -9.600PF06822.12; Q8V3H2_SWPV1/11-275; Protein of unknown function (DUF1235 topsan)  ali follow..  11  20.......................................................MNVTNYYDSNHSDIILSEIEHCIN-------EKIYTSNMITIKHYDQHTIRKK-----TIESVSCNSVKAFVCIQSAKKGGMLIVFNKITIHPNTNCIVLLNSLAEYSISNVNRGTVTIITLDIDIPSMRIIDK-KIKNIHYSNS-LTLLNPIKCNEIVFVIKQLLDIHSLSVICEQILINNE----------------------------------------------YMIIRCGTNKFYLPSVCLGKILLNFNYVYDNFDKEKIAAIINNNTPFDLIYPQKSIYR... 252
9 -7.960PF13532.6; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily  ali follow..  9  2...........LLIIKQFLTPQEQQELVDDSRCMGLGEGGFYKPTYASGAKCRLHDYAPIRTLPDSWKTYAQRSLDAAKKIDPLVMGSCK--DICVVNFYKKAGRNGMHIDKDESDEAMSMGSPVI----SFSVGCAAEFAAVPIVRLESGDALVFGRTVVHALTRVYNNT----RLNLTFR................................................................................................................................................................... 211
10 -7.220PF10014.9; A9IE89_BORPD/63-254; 2OG-Fe dioxygenase  ali follow..  15  39....................................PSQPHYQSVTYNTLNGGIARHFAPIEPSIASGKVLMSALELCRATFSGLAPFNHWHIEVHQFRIVATSAEGLHRD-------GVSFVFMMLVNRVNVLNGETGIYDRDRLADPLDAAIVNDERTMHGVTPILAGYRDVL.......................................................................................................................................................................... 189
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.