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Query: PF03379.13; CCMB_RHOCB/1-215; CcmB protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRALLSRDLRLAIRAGGGFGLGLAFFLIVVTLVPFGVGPQGEILARIASGILWLGALLACLLSLDRIFALDFEDGSLDLLATAPIPMEAVVTIKALAHWITTGLPLVLAAPLFAVLLHLPAPAYLWLEVSLLLGTPALSVLGTFGAALTVGLKRGGLLLPLLALPLYVPTLIFGAELVRRGAEGLAIEVPLAMLAGITAATVALVPFASAAAIRVLast
1 -98.700PF03379.13; CCMB_RHOCB/1-215; CcmB protein  ali  100  1MRALLSRDLRLAIRAGGGFGLGLAFFLIVVTLVPFGVGPQGEILARIASGILWLGALLACLLSLDRIFALDFEDGSLDLLATAPIPMEAVVTIKALAHWITTGLPLVLAAPLFAVLLHLPAPAYLWLEVSLLLGTPALSVLGTFGAALTVGLKRGGLLLPLLALPLYVPTLIFGAELVRRGAEGLAIEVPLAMLAGITAATVALVPFASAAAIRV 215
2 -18.300PF12679.7; E4NSW3_HALBP/4-306; ABC-2 family transporter protein  ali follow..  15  2..AVARKEFDDSIRSRWLHGATVFFVLFVGGAALLAFGDLGIFSLSFPGLLALILGFIALSTSYG-SITEERETGTMKLSLSLPNSRRDLIVGKLLGRGAVVIVALLAGFLAAFVAMGISYGSFVPMIALTVLLAFAFVSIGLGISAVADTNREATLATLGLYLIFGI............................................... 189
3 -12.800PF16949.5; B4D3C0_9BACT/40-578; Putative ATP-binding cassette  ali follow..  20  302TAALVLKDARLFWRDPAQWIQFMIFFGLLCIYVVNLRNVAFNFQNPFWETMI-CSLTLSTLTTRFVFPQFSLEGRLLWLVGLAPIGLRKVLLQKFWTSVFTTTAITVSLMITSSLMLHLPWLRVGFFAVAIALMSATLSGLSVGLGALFPNFKEDNLCLVASFLYITLFVSLSALPDIARVSKFPWEVPTALPYALALLLSFSVMLFPLLLAIR. 532
4 -12.200PF12730.7; R6N7Z5_9FIRM/4-186; ABC-2 family transporter protein  ali follow..  11  1...LLWAEF-QKLRRSNIILFTVFAIVFTAVFVFLAGTTTASPEQMTVWYMTMVWLVLPAVIALSYMICREEQDDTIKNLSLIPVNERKLTAAKMIILFLFSILFLLTFSIEMVLHSELSIKIFFDFLKMYLL--EGIGVFFAVSPIIALVPLKKNYWLALAV.................................................... 161
5 -9.880PF01061.24; AB34G_ARATH/524-737; ABC-2 type transporter  ali follow..  11  3FKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGALFFSLINLMFNGMAEVFFKQRDFLFYPPW--------AFALPGFLLKIPLSLIESVIWIALTYYTIGFSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFV............................................... 178
6 -8.710PF12698.7; ABCA6_MOUSE/28-416; ABC-2 family transporter protein  ali follow..  10  197..................................................ILFCLLYFSSFIYFASSNVTKERKQCKEVMKVMGLQDSAFWLSWGLIYVGFIFIISIFIAIIITSTQIIMMTGFLVIFTLFFLYGLSLIAVTFLMAVLLQKAVLTNLIVLFFTL................................................... 310
7 -8.230PF13346.6; D4LWN6_9FIRM/3-214; ABC-2 family transporter protein  ali follow..  11  2...LLKNNFYGVIENLKIALAFVMLVGVLLLITG----------ATLLSAFSLIAPPIIALLMVS-CVRKESASKWEKYKLTLPVRRKAIIESQYISHTIWSISGVVIVAVFMTLTVFIHGDQYFYYGFRAITLVLGGGILAILIGAFSYGAEKTEVILIISVIGSIGIVFALTMLVNTFSDGNVSDTLYYISLLVVTAITIITFIFSCVLTKQI 210
8 -7.390PF15724.5; L5JX75_PTEAL/24-275; TMEM119 family  ali follow..  12  4.....................................................VPLQAAPLEDMGGSGEAEDSSASSPSLPPPGTPALSPTSVGPQPTLLAGPKPPTNFLDGIVDFFRQY------VMLIAVVGSLVFLLMFIVCAALITRQKHKAS----AYYPSSFP.............................................. 109
9 -6.960PF06182.11; P74757_SYNY3/4-229; ABC-2 family transporter protein  ali follow..  14  1......................VVNLGGSLFSLFLFYRTGYSFAGWNWQSALVVLGMFTILQGLAATLVRYVEQGTLDFVLLKPISSQFWLSLRQLS--VPDICFGLGLIVYAGVSLNLKAWDLVLGTILLGLGCIVLYSIWFMLGATSIWFVKIYNVTEVLKYPMIIPIAFLTTVPAEAMLGRLDPIWLLATAGLAIALLTL............ 210
10 -6.550PF03064.16; U79_HHV6Z/6-234; HSV U79 / HCMV P34  ali follow..  8  3.YGSFDNVIQAYEQIISQSLHLKRFEFDNGCFIEFL--ADSGTCETFSKG--WISMIYMGSLTVDIGMDEGKCRT............................................................................................................................................ 79
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.