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Query: PF03400.13; Q32H87_SHIDS/20-150; IS1 transposase, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst VIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQLast
1 -93.700PF03400.13; Q32H87_SHIDS/20-150; IS1 transposase  ali  100  1VIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ 131
2 -17.700PF12762.7; Q3SWJ2_NITWN/132-286; ISXO2-like transposase domain  ali follow..  14  8...IVEADE--TYFGKAKNDRPIVSLVERGGN-VRSFHVAVADSSTVACIVNANVHKE-SRLQTDESRLYTKV-GAKEYARGDVTTNTIESYFSVFKRGMRGTYQHC-----SEKHLHRYLAEFDFRYN.. 155
3 -15.400PF13610.6; Q6LW75_PHOPR/74-213; DDE domain  ali follow..  15  4.....QLDE--TYVKVKGKWHYLYRAINKQGETLDFYFSHKRNKEAAYQFLRRCLDNQPKTLNTDKHSSYANAIADVEQRQVKYLNNGIESDHAPIK----KLVVATGGF-KIRKRAWSTIQGFESFRMLN 137
4 -7.810PF12913.7; Q3A1R0_PELCD/145-197; SH3 domain (SH3b1 type)  ali follow..  21  30RVRHRSADGCWVLVETEAMFGWL............................................................................................................ 52
5 -6.610PF02914.15; TRA_HAEIN/267-485; Bacteriophage Mu transposase  ali follow..  9  16.....QHNVWVRFPDGEIKRPKTWLWQDVRTRKVLAARTDENTDTIRLSLLDVISRYGLKHLTIDNTRAAANKKMTGQFGKGRGQAKPIERAFSHGYEKPDYDGKNGAEQPVDYATFLMALEQGIQQWNNV 196
6 -6.260PF03031.18; A0DDQ0_PARTE/225-388; NLI interacting factor-like phosphatase  ali follow..  11  1ITIVFDLDE--TLVHCNENLA---VIFTIQVSPQEKIKAGINVRPGAVKLLELLVKDFELIVFTASHPCYAQKV-----------IEYLDPQKTLFSHSLYRIMTTGGMYTKDLRIFNRSLSQLVLVDN.. 120
7 -6.140PF01610.17; A4XPD4_PSEMY/163-420; Transposase  ali follow..  7  1....LGVDEH-VWRHTRCGDKYVTIVVDNGPARLLD-VLEGRSKQAFKQWLQSRPKSQIESIAMDGFTGFKSAAQEDPFHVVRWASNMLDECRRRVQHDILGRRGRKNDPLYKSRRT.............. 130
8 -6.120PF15196.6; HRK_MOUSE/1-92; Activator of apoptosis harakiri  ali follow..  18  42.......DELHRRAMRRRARRWPWLCAAAQVAALAAWLLGRRSA....................................................................................... 92
9 -6.070PF02998.14; Q9W959_9RETR/2-87; Lentiviral Tat protein  ali follow..  5  10....IHQEDLVRDIWERERDAWQWISVRAPGEVLQRWLAMLKSGRNRKRVLREMQK........................................................................... 61
10 -5.650PF03519.14; W0HTY6_9GAMM/17-94; Invasion protein B family  ali follow..  11  15.TIALDFNDMPSYISSSDDDIWLWSRIAEYQDTILE............................................................................................... 50
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.