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Query: PF03532.13; O50963_BORBU/3-255; OMS28 porin, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KIFSNLIINGLLFGFVSLNVFADSNNANILKPQSNVLEHSDQKDNKKLDQKDQVNQALDTINKVTEDVSSKLEGVRESSLELVESNDAGVVKKFVGSMSLMSDVAKGTVVASQEATIVAKCSGMVAEGANKVVEMSKKAVQETQKAVSVAGEATFLIEKQIMLNKSPNNKELELTKEEFAKVEQVKETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVVKVAQGARDLTKVMAISLYLast
1 -89.800PF03532.13; O50963_BORBU/3-255; OMS28 porin  ali  100  1KIFSNLIINGLLFGFVSLNVFADSNNANILKPQSNVLEHSDQKDNKKLDQKDQVNQALDTINKVTEDVSSKLEGVRESSLELVESNDAGVVKKFVGSMSLMSDVAKGTVVASQEATIVAKCSGMVAEGANKVVEMSKKAVQETQKAVSVAGEATFLIEKQIMLNKSPNNKELELTKEEFAKVEQVKETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVVKVAQGARDLTKVMAISLY 253
2 -46.400PF00015.21; MCPC_SALTY/326-483; Methyl-accepting chemotaxis protein (MCP) signalling domain  ali follow..  16  4..................................................AKTASETARKGGRVVDNVVSTMNDIAES------------SEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLI---------------------ENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVT............... 158
3 -16.600PF09599.10; Q7NUS9_CHRVO/2-343; Salmonella-Shigella invasin protein C (IpaC_SipC)  ali follow..  9  78......................MSALRTADNALSTKLSLVSFDATKATAASMVREGIANLSSSIVQSVGQSLNGLNAERGALKNNALGDEGRNVQATLSRQNTVKLAADADGLKQVGLKPQNGAARPEVAELSAQPNAAASVADGMAGDKISLQSSNSKLARQHEAALGSSTEDLTAKSQAEQLAMDDTKLKAQAKQTTGKAIMDSSAAAGNIAGGSGRYAATLEQSEQQISQASRVASTASEETRESSRKA. 323
4 -10.800PF04344.13; E0SIM0_DICD3/15-214; Chemotaxis phosphatase, CheZ  ali follow..  10  1..........................................................................................TEIISRIGQLTRMLRDSLKELGLDQAITEA-----AEAIPDARDRLDYVVQMTAQAAERALSCVEAAQNQLEEESKSLKVRWDQWFENPIELSEARELVTDTRNYLESVPDHTAFTNAQLLEIMMAQDFQDLTGQVIKRMMDVVQEIEKQLLM.......... 151
5 -9.480PF03207.13; H7C7Q2_BORBU/1-254; Borrelia outer surface protein D (OspD)  ali follow..  10  36........QKGYLDNEGANSNYESKKQSILSELNQLLKQTTNSLKEAKNTTDNLNNEANKVVEAVINAVNLISSAADQVKSATKNMH-DLAQMAEIDLEKIKNSSDKAI--ASNLAKEAYSLTKA------AEQNMQKLYKEQQKISESESESDYSDSAEIKQAKEAVEIAWKATVEAKDKLIDVENTVKETLDKIKT----ETTNNTKLADIKEAAELVLQIAKNAKEIVQEVVAL................ 254
6 -8.430PF06008.14; LAMA1_HUMAN/1575-1831; Laminin Domain I  ali follow..  13  16ILSNLENTTKYLQESLLKENMQKDLGKIKLEGVAEETDNLQKKLTRMLASTQKVNRATERIFKESQDLAIAIERLQMSITEIMEKT-STLQNMQQNGTSLLEIMQIRD-----NATLELKAAED-----------LSQIQENYQKPLEELEVLKEAASHVLSKHNNELKAAEALVREAEAKMQESNHLLLMVNANLREFSDKKLHVQEEQNLTSELIVQGRGLIDAAAAQTDAVQD................. 255
7 -8.270PF06009.12; LAMA_DROME/2566-2700; Laminin Domain II  ali follow..  13  1..............................................................................................................................................SNANASDALEILKNVLEILEPVSVQTPKELEKAHGINRDLDLTNKDVSQANKQLDDVEGSVSKLNELAEDIEEQQHRVGSQSRQLGQEIENLKAQVEAARQLANSIKVGV. 110
8 -7.060PF12128.8; Q8EAA0_SHEON/8-1195; Protein of unknown function (DUF3584 topsan)  ali follow..  7  454..VDGVTYTEEEKLNLAIFDERIHRADEEQESCNAKVERLTSDERKLRAKRDQANEALRIASLRVNERQTALDELHHMLFPQSHTLLEFLRKEAQGWEQSLGKVIAPELLHRTDLHPSVTGESDTVFGVNLDLKAID--VPEYAASEQELRIRLSKAEEALQSAQELQAEAESQLVAINGELDKLSRELTFARTAYKNSRDDLRRLFDEKRSEQDKINKAAERKAFAQQRLTQLDGELKQLKHQHQLWLEEQ. 702
9 -6.770PF06120.11; D3V365_XENBS/409-693; Tail length tape measure protein  ali follow..  6  2.....................................................................ARLNAVTSLGSRMGGALLG-----VGGLPGIL--------IMAAGAAYLLYQNQKQAKEEARHAKEATKIKEELSKMDPQLRDTKNQLKEDLAVAKEDVEKFRKEMNKNQISLNLFMKDKSNGKNTDIKITEFSTKLSESRSAYEAALKTVGEITSALTSLGDQQTINGEKEKRFITAINEMR. 174
10 -6.630PF11887.8; A1T3L0_MYCVP/145-410; Cholesterol uptake porter CUP1 of Mce4, putative  ali follow..  12  3....................................................................................................LVDLLDKVDPAKLNAILSALAEGLRGQG-----PAIGEATTAANEVLHALNPRSDTVRASLAAASETYSDAAQDIMAVLDSFTTTAVTLDEQSSALDALLVNAAGLARSGIDLLGVSKD------DFVHTVNTLEPTTGLLEKYSPSLTCLL. 146
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;