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Query: PF03547.18; PIN6_ARATH/9-565; Membrane transport protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TVMCAMAPLYFAMFVAYGSVKWCKIFTPAQCSGINRFVSVFAVPVLSFHFISQNNPYKMDTMFILADTLSKIFVFVLLSLWAVFFKAGGLDWLITLFSIATLPNTLVMGIPLLQAMYGDYTQTLMVQLVVLQCIIWYTLLLFLFELRAARLLIRAEFPGQAAGSIAKIQVDDDVISLDGMDPLRTETETDVNGRIRLRIRRSVSSVPDSVMSSSLCLTPRASNLSNAEIFSVNTPNNRFFHGGGGSGTLQFYNGSNEIMFCNGDLGGFGFTRPGLGASPRRLSGYASSDAYSLQPTPRASNFNELDVNGNGTPVWMKSPAAGRIYRQSSPKMMWESGQRHAAKDINGSVPEKEISFRDALKAAPQATAAGGGASMEEGAAGKDTTPVAAIGKQEMPSAIVMMRLILTVVGRKLSRNPNTYSSLLGLVWSLISFKWNIPMPNIVDFSIKIISDAGLGMAMFSLGLFMALQPKMIPCGAKKATMGMLIRFISGPLFMAGASLLVGLRGSRLHAAIVQAALPQGIVPFVFAREYNLHPDLLSTLVIFGMIVSLPVTILYYLast
1 -135.000PF03547.18; PIN6_ARATH/9-565; Membrane transport protein  ali  100  1TVMCAMAPLYFAMFVAYGSVKWCKIFTPAQCSGINRFVSVFAVPVLSFHFISQNNPYKMDTMFILADTLSKIFVFVLLSLWAVFFKAGGLDWLITLFSIATLPNTLVMGIPLLQAMYGDYTQTLMVQLVVLQCIIWYTLLLFLFELRAARLLIRAEFPGQAAGSIAKIQVDDDVISLDGMDPLRTETETDVNGRIRLRIRRSVSSVPDSVMSSSLCLTPRASNLSNAEIFSVNTPNNRFFHGGGGSGTLQFYNGSNEIMFCNGDLGGFGFTRPGLGASPRRLSGYASSDAYSLQPTPRASNFNELDVNGNGTPVWMKSPAAGRIYRQSSPKMMWESGQRHAAKDINGSVPEKEISFRDALKAAPQATAAGGGASMEEGAAGKDTTPVAAIGKQEMPSAIVMMRLILTVVGRKLSRNPNTYSSLLGLVWSLISFKWNIPMPNIVDFSIKIISDAGLGMAMFSLGLFMALQPKMIPCGAKKATMGMLIRFISGPLFMAGASLLVGLRGSRLHAAIVQAALPQGIVPFVFAREYNLHPDLLSTLVIFGMIVSLPVTILYY 557
2 -18.400PF01758.16; P73938_SYNY3/12-198; Sodium Bile acid symporter family  ali follow..  22  2....................................................................................................................................................................................................................................................................................................................................................................................................................................................................LALFLIMFGMGLGLTIKDNRIWLEPKAVAIGLIAQLVMLPMVGFGLSSLFSLSPELAVGLMILAACPGGSTSNVITYLLKGNVALSITLTAISSLVTIITIPLV. 106
3 -14.400PF13593.6; Q7CIJ9_YERPE/10-319; SBF-like CPA transporter family (DUF4137 topsan)  ali follow..  14  1...............................................................................................................................................................................................................................................................................................................................................................................................................................DKFLLVLILVVIIASI-------FPCETKVWFERLTTAAIALLFFMHGAKLSRAAIMTGGHWKLHLVVFLSTFALFPLLGVGMNVLVVLTPTLYLGFLYLCALPATVQSIAYTSVAGGNVAAAICSASASSILGVFLSPIL. 140
4 -9.520PF02659.15; MNTP_SHIDS/30-182; Putative manganese efflux pump  ali follow..  12  4.............................................................................................................................................................................................................................................................................................................................................................................................................................FSEALRTGLIFGA-VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEGFRDDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGCATLIMSSIIGKKAEILGGLVLIGIGVQIL...... 153
5 -9.200PF16009.5; H9JW12_BOMMO/205-364; Domain of unknown function (DUF4779 topsan)  ali follow..  6  1..............................................................................................................................................................................................................................................TQGGGHANLGNHHAEHGGKTTKGFSTDHFVDKGGKGYKTDEHHRKEYEDAGGNKKKHHDHAGHQGSHEEEAHGSRGSHFGEKKGHKKGHKTKGYHNKYHKDEFHKEHKFYDDFHKSGEHHRYGKFHAKHASNESGKKKAHRVDAGHDYVERGKKGYSNK................................................................................................................................................................ 159
6 -9.080PF05145.12; Q5KZS5_GEOKA/38-352; Transition state regulatory protein AbrB  ali follow..  14  160.................................................................................................................................................................................................................................................................................................................................................................................................................................VWLYLIVTVASAIIGRRIKLPTAYLLGPII--LPAPLLDIAQIAMGAYLGLM-AEKGRAVLAAVVTGLALILFSMASAFVLTALHGVP-----LTAFIALAPGGMDQMILAREAHADLAVVTSYQMFRIFFILLVVPPVL 313
7 -8.930PF16228.5; Q5HQV7_STAEQ/24-195; Domain of unknown function (DUF4887 topsan)  ali follow..  5  1....................................................................................................................................................................................................................................IYSFVDSSKKGNERLSDKTTQQEKKKDDKDKKEKKDKKSVEEKKNNTQQTQQVPQTQQTQQTQQTVQTPQRPTTQTPVRQNPQTGEKRAKEPKTDERKKTRQDSSNSKESPNEKDQSSTQQKPQQNKSNQSSENRQSTQNKSNQTQSTRPQNNGNSGNQNASSGQNTQKQN.............................................................................................................................................................. 171
8 -8.860PF07133.11; Q8IJ54_PLAF7/184-370; Merozoite surface protein (SPAM)  ali follow..  6  4........................................................................................................................................................................................................................................FGGGAPQNGAAEDKKTEYLLEQIKIPSWDRNNIPDENEQVIEDPQEDNKDEDEDEETETENLETEDDNNEEIEENEEDDIDEESVEEKEEEEEKKEEEEKKEEKKEEKKPDNEITNEVKEEQKYSSPSDINAQNLISNKNKKNDETKKTAENIVKTLVGLFNEKNEIDSTINNLVQEMIHLFSN............................................................................................................................................. 187
9 -8.690PF03601.14; YEIH_ECOLI/18-326; Conserved hypothetical protein 698  ali follow..  10  28...............................................................................................................................................................................................................................................................................................................................................................................................................................SALTLAILLGMVLG---NTIYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGISGIIIDVLTLSSTFL-LACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTVAIFLY. 164
10 -8.350PF03334.14; T2GE89_DESGI/14-95; Na+/H+ antiporter subunit  ali follow..  17  1......................................................................................................................................................................................................................................................................................................................................................................................................................................VLGLVFYTGGTVGIIRFPDFYARLHAAGKLDSLGALMMLAGCAIQHVNLGTVLTALKIMLIIVFIFLASPTATHAIVDA........................................................ 82
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.