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Query: PF03596.13; Q9JXN6_NEIMB/16-206; Cadmium resistance transporter, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190
# Score Template Links and tools%idFirst YSGTAVDLLIILMLFFAKRKSRKDIINIYLGQFLGSVSLILLSLLFAFVLDYIPSKEILGLLGLIPILLGIKVLLLGDSDGEAIAKEGLRKDNKNLIFLVAMITFASCGADNIGVFVPYFTTLNLANLIVALLTFLVMIYLLVFSAQKLAQVPSVGETLEKYSRWFVAVVYLGLGIYILVENNSFDMLWTVLast
1 -98.200PF03596.13; Q9JXN6_NEIMB/16-206; Cadmium resistance transporter  ali  100  1YSGTAVDLLIILMLFFAKRKSRKDIINIYLGQFLGSVSLILLSLLFAFVLDYIPSKEILGLLGLIPILLGIKVLLLGDSDGEAIAKEGLRKDNKNLIFLVAMITFASCGADNIGVFVPYFTTLNLANLIVALLTFLVMIYLLVFSAQKLAQVPSVGETLEKYSRWFVAVVYLGLGIYILVENNSFDMLWTV 191
2 -12.900PF11139.8; A0QQE7_MYCS2/12-220; Sap, sulfolipid-1-addressing protein  ali follow..  14  15........IIPAVLVLQTPRPRPTGLAFLGGWLVGMAALTALFIEVSNLFGRLDKPP---VLGTALIIFGVYRWLNRSKAAHTPKWMQSMGKLTPPRAGVTGVVLTIVNPKVLFICAAA-AGLGQPQVWAAAIWFVVFASSTVALPILAPTLARLGEWMERQHAVLVAVILVVIGLLVLYKG......... 207
3 -11.600PF02659.15; MNTP_SHIDS/30-182; Putative manganese efflux pump  ali follow..  17  23............................LIGWGMGMLASRFVLEWNHW------------IAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHG----FWLLVTTAIATSLDAMAVGVGL--AFLQVNIIATALAIGCATLIMSTLGMMVGRF--IGSIIGKKAEILGGLVLIGIGVQIL............ 153
4 -10.400PF01914.17; YCHE_ECOLI/8-210; MarC family integral membrane protein  ali follow..  10  14.LVNPVGIIPVFISMTSYQTAAARNKTNLTANLSVAIILWISLFLGDTILQLF---------GILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSISYLFGFFVAIALFALCCWGLFRMAPVRVLRQTGINVITRIMGLLLMALGIEFIVTG......... 198
5 -10.400PF01810.18; RHTC_ECOLI/13-206; LysE type translocator  ali follow..  13  11.........FFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGIALLGLHLIIEKMAWLHIMVGGGL-CWMGYQMLRGALKKEAVSAPAPQVELAKSGRSFLKGLLTNLANPKAIIYFGSVFSNVGTTARWGIFALIIVETLAWFTVVASLFALPQMRRGYQRLAKWIAGALFAGFGIHLIISR......... 194
6 -7.290PF05297.11; LMP1_EBVB9/1-386; Herpesvirus latent membrane protein 1 (LMP1)  ali follow..  20  31........LLLLALLF---------LYIVMSDWTGGALLVLYSLIIIILIIFIFRRDLLCPLGALCILLLM------------------------ITLLLIALWNLHGQALFLGIVLFIFG-------------CLLVLGIWIYLLEMLWRLATIWQLLAFFLAFFLDLILLIIALYL--QQNWWTLLVDL 171
7 -7.250PF12679.7; E4NSW3_HALBP/4-306; ABC-2 family transporter protein  ali follow..  12  74........FIALSTSYGSITEERERRDLIVGKLLGRGAVVIVALLAGFLAAFVAMVATGTGISYGSFVP-----------------------------MIALTVLLAFAFVSIGLGISAVADTNREATLATLGLYLIFGILWKPIAEGIPK........................................ 200
8 -7.120PF03741.16; Q8EG61_SHEON/77-283; Integral membrane protein TerC family  ali follow..  15  9..SLSMDNVFVIALIFSGIPRLYQHRVLFWGIMGVIVLRAIMIGLGAALVAQY--QGVLVLFGLFLIFTGIKMLFSNDEHGDIQDNKFYKWLRS-LALILVETADLVFAVDSI-----------PAIFAITQDPFIVYTSNIFAILGLRALYFALAAMVHRF-KYALSVVLVFIGVKV............. 206
9 -6.710PF03239.14; FTR1_YEAST/7-321; Iron permease FTR1 family  ali follow..  12  12....CLEAVIVISVLLSFLKQAIGEIQVWVGVLLGFIICLAIGAGFIGAYYSLAEDLWEGIFCMIATIM-IARSLVEIPHRKRDYFKIGFLSRRYAMFLLPFITVLREGLEAVVFVAGAGITTQGSHASAYPLPVVVGLICGGLVGYLLYYGASKSSLQIFLILSTSILYLISAGLF.............. 221
10 -6.090PF10101.9; B2U841_RALPJ/177-938; Predicted membrane protein (DUF2339 topsan)  ali follow..  11  4.........................................................SVVRVGILVLFFGVAFLLKYAADNSLLPVEFRLAGVAVGAIVLLGILVLQGGGVGV-LYLTVFAATRVVPLLSPGMAFPLLVLICALAGLAVKQNAPALAFTGSAGGFLAPILLLNAGIFAIAWFRAWRALNLL 165

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.