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Query: PF03613.14; Q5WAK6_BACSK/17-280; PTS system mannose/fructose/sorbose family IID component, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst QVTKKDLRKVFWRSFTLQGSFNYERMQALGYAYSMIPVLKKLYPNPEERAKALKRHLEFFNSTPQMSTFIMGLSAAMEEKAAKDKEFDADSINSVKVALMGPVAGIGDSFFWGTFRIIAAGVGVSLASTGNILGAILFLLIFNVPHLLVRYQGTFMGYSKGTTFLNMMYQGGSINRLTYAAGILGLLVIGAMTGTLIELSTPIEFQLEGASVALQDTLDDILPQALPLGLTFGIYYMLKKNVKVNYIMLGIIALGILGTWVGILLast
1 -112.000PF03613.14; Q5WAK6_BACSK/17-280; PTS system mannose/fructose/sorbose family IID component  ali  100  1QVTKKDLRKVFWRSFTLQGSFNYERMQALGYAYSMIPVLKKLYPNPEERAKALKRHLEFFNSTPQMSTFIMGLSAAMEEKAAKDKEFDADSINSVKVALMGPVAGIGDSFFWGTFRIIAAGVGVSLASTGNILGAILFLLIFNVPHLLVRYQGTFMGYSKGTTFLNMMYQGGSINRLTYAAGILGLLVIGAMTGTLIELSTPIEFQLEGASVALQDTLDDILPQALPLGLTFGIYYMLKKNVKVNYIMLGIIALGILGTWVGIL 264
2 -7.680PF11166.8; Q2FYD6_STAA8/2-99; Protein of unknown function (DUF2951 topsan)  ali follow..  17  13......................................LTRLEENDKTMFEKFDRIEDSLRTQEKIYDKLDRNFEELRRDKEKNKEKNAKNIRDIKMWILGLIGTILSTFVIALLKTIFG................................................................................................................................................ 97
3 -6.460PF09512.10; R7D9Z9_9FIRM/12-160; Thiamine-precursor transporter protein (ThiW)  ali follow..  21  30........................................................................................QHMVNVFAAVMLGPWWGIGIAFCASLIRNLL-GIGSLLAFPGSMVGALCCGLVFRLTR---KLSLTCVAEALGTGILGGLAAYPVAKLLMGLAPAGFTVYMIPFFISTF................................................................... 134
4 -6.120PF17410.2; A0A024VXK5_PLAFA/31-305; Subtelomeric Variable Open Reading frame  ali follow..  50KYQKNHDPYEQLKDVVEKNGRKYTGRHGEQPMSTIEKELLETYEEMFGNESDMLKLGKYKNDDDKSDDSSSCGCTNINNMKLAKTKGRDKYLKHLKGRCTR---GIYSCSILSAFLTLIGLALAKKAAIASLVNYGTVFQNCVSSS-----------------SLFHIFDSVSLTAALKATSTCASAAGGDVITPAVGAAIGTFPPYGIAA---------LVLLILAVVLIILYIWLYRRRKNSYK.................. 266
5 -6.100PF06570.11; Q8DXY5_STRA5/5-213; Protein of unknown function (DUF1129 topsan)  ali follow..  10  5..........................KNQEFVHIATNQLLADGKSDAEIKAILEEHLPEIQKKGITARSLLGAPTTWAASFTERPEDKARVSVQKNTNPW--LMWLDTSLLFLGLVTALNGLMLLFGQSNVNTGLISILTLGFGGGAAM---YVTYYYIYRHMGKPKSERPGWLKSFAVLALVMLVWFALFAVVPL-----------------LPATINPKLPEVVLFIIALASFFYLQRKYN..................... 205
6 -5.830PF03014.14; F5BB18_9VIRU/7-634; Structural protein 2  ali follow..  10  42.......................GEIDSLLYTSGLSPAVVLSFSSFTSPAVVFAANYEKYKILSLAPEAISSYNLSVVWFPDASEGPTSLQATNLSMVRRYHSILPGQSGSLGLFMVVCHGAPFNHYRDTQYLGPLF--------KIQFEFKLSVFGYSPGNIPVKVQGASATEIVSFGTVDGKATFDTPSAIALHASYQSGPPNSPGPSIGQVLLTVADTVSAALPFPFSILALFFIRKITGANGTSFMVY............ 300
7 -5.800PF11890.8; R5IJJ0_9BACT/291-364; Domain of unknown function (DUF3410 topsan)  ali follow..  13  16.................................ILASAVLATYDPRND-TAALRAAPGTFE--------------KLRGEYGLRREFNAYTVHHAVSRDIELLQKLG............................................................................................................................................................. 74
8 -5.730PF15800.5; W5LMM6_ASTMX/27-353; Clock interacting protein circadian  ali follow..  10  253...........................................SESSDSDNSSNKRKRFCNTYNILSK-LLDITLRTKELIRQNRRTQTE-LDQLRTNLFMEVLQTGDLHVLSKLQ.................................................................................................................................................... 327
9 -5.730PF16716.5; G1PEX9_MYOLU/54-144; Bone marrow stromal antigen 2  ali follow..  14  7.......................DGLRAEQECRNNTHLLEHELTQAQEVLRGTEAQAATCNQT------VETLKISLKEEKAAGHKQQQEEIKTLNQSLQEKSAELQD............................................................................................................................................................ 91
10 -5.670PF12057.8; K7JNU2_NASVI/339-452; BCL2-associated athanogene 6  ali follow..  11  1..................................MAELLERLVNTQDRLRPYIERYRVLMLADPSLTP-------GSGPEGVAENQRIVDGVSECLHYLSHACHALSD............................................................................................................................................................ 67

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.