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Query: PF03797.19; Q32HY9_SHIDS/423-663; Autotransporter beta-domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTIRGLFFGYSHSDIGFDHGGKGNVDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKMSNGATAFGDYNSNGAGAHVESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADVGNTQILRAEAGTAVSYHMDLQNGTTLEPWLKAAVRQEYADSNQVKVNDDGKFNNDVAGTRGVYQAGIRSSFTPTLSGHLSVSLast
1 -99.800PF03797.19; Q32HY9_SHIDS/423-663; Autotransporter beta-domain  ali  100  1MWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTIRGLFFGYSHSDIGFDHGGKGNVDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKMSNGATAFGDYNSNGAGAHVESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADVGNTQILRAEAGTAVSYHMDLQNGTTLEPWLKAAVRQEYADSNQVKVNDDGKFNNDVAGTRGVYQAGIRSSFTPTLSGHLSVS 241
2 -23.100PF06178.13; Q8ZQ33_SALTY/16-230; Oligogalacturonate-specific porin protein (KdgM)  ali follow..  9  1...........................................FSSYLQAATLDYRHEYADRTRINKDRIAIIEKLPNGIGFYVDASVKSGGVDGEQDKHLS---------DLVANAIELGVSYNYKVTNFVLQPGFIFES---GPDTSIYKPYLRGQYNFDSGVYMAGRYRYDYARKTANYSDDEKTNRFDTYIGYVFDENFTWMDSDQIKFDNKKTNYEHNVALAWKLNKSFTPYVEVG 192
3 -16.300PF13505.6; Q98N05_RHILO/16-224; Outer membrane protein beta-barrel domain  ali follow..  9  24..........................................................................NW---SGAYIGIGGGFGASVHKFSVAPIIDF---NGIGGNGVFGELTAGYDYMVSDRFL--FIDANGGNIGPSISIPGADIDLTNSYGFDVGLRAGYLLNPDT---------GYVLGGYSWQHFKLDGSGFAEGLNFTQNRSG--YVLGVGMETVLRGNWTLKTEY. 174
4 -13.900PF01389.17; OMP53_HAEIF/23-224; OmpA-like transmembrane domain  ali follow..  15  4...............................................................................NTFYAGVKAGQGSFHDGINNNGAIKKGLSSGYRRNTFTYGVFGGYQILNQD------AELGYDDFGRAKLREAGKPKAKHTNHGYLSLKGSYEVLDGLDV--------YGKAGVALDYKFYEDANGTRDHKKGRHTARASGLFAVGAEYAVLPELAVRLEYQ 163
5 -13.400PF07239.11; C0DX39_EIKCO/30-267; Outer membrane protein OpcA  ali follow..  11  19.............KIDQLKYSGDGVTLQGRADIPL---AQQHAIRAELGYRYLDSDAKANGEKVINGAGYLFSPSGFKNGGLRVGGGLGYSHGKMDLHSHQTDLDGDAVDISANNLYLKAQVEYEQQLGSWSITPWTEAQVSRRVEEKYTQIEFASDGRYKQNNYSLGLGVDVNKQLGESTSLTFGPYYR----YARDKATSFTHEDENIEVPKTSRHSFGIRGGVRF............. 238
6 -13.000PF12099.8; R5KMA1_9BACT/7-191; Protein of unknown function (DUF3575 topsan)  ali follow..  11  32..........................PNIGVEASVGKK-----HTVQLFYGLNPWKQSGGDQSSLRHWTLMPEYRYWSFNGWFIGAHLMGGQFNMG--PFGVFNELEDHRYEGWYAGGGITAGYQWPLSKWNIEASLGVGYDYIQYDKFRCGECGERLKSDHTNYFGKLALSVLYIF................................................................ 185
7 -12.800PF05736.11; PORF_PSEFL/1-186; OprF membrane domain  ali follow..  14  26.............................................................................GQGAVEGELFYKKQYNDSVKHI-------------EDGFNPGARIGYFLTDD------SLNLSYDKTNHTRSNDGTG------SQKIGGDTSSLTAQYHFGQAGVDSLRPYVEGGF-----GHQSRGNVKADGHSGRDQSTLAIAGAGVKYYFTNNVYARAGVE 160
8 -12.700PF09381.10; D1AL54_SEBTE/71-353; Outer membrane protein G (OmpG)  ali follow..  11  53............FDYSDWTRGNYLNRLELRAHYQF-TDNDKYAVGLGAALRNYQWFHKDGTTTNNRWLNIQPDWRYNFTSNLSYEGWLGLYSMFNDAQENGYSD-----------KELETESGLKYK-----FNDFISVRLNYYLDRGWNLGGPTENSFNNQQI---RGYVPMNFAFFGEKTTTITPYFRQGFINKSWNAGANQANNEIDT---------RLGLRIDQQLPAGFAVSLEYA 255
9 -12.700PF03922.14; Q98A70_RHILO/45-230; OmpW family  ali follow..  14  1.............................................................................APSPWQIRLRALGVITEDSGYVNAVPGSGLSYS---NTVTPELDISYFFT-DNIAAELILGTTYANIDGQGAIGGLGKVGKVWL-------LPPTLTLQYHFTDFGAFEPYIGAGVNYTIFYHQQVGSADDLKVKNTFG---AALQVGFDYMVDQHWGVNFDVK 150
10 -9.920PF06316.11; Q9LA63_9CAUD/1-199; Enterobacterial Ail/Lom protein  ali follow..  9  12..........................VVWLVAAGTPASAAEHQSTLSAGYLQTHTDMPGSD----DLNGINVKYRYEFTDTLGLITSFSYANAEGEQKTHYNDTRWHEDSVRNRWFSVMAGPSVRV---------------------------------NEWFSAYALAGVSYARVSSFAGDYVTLT----------SDEGKKQEHLTRSDSGRRSHTALTYSAGVQINPTENIVVDLAYE 179
11 -9.570PF17251.2; Q6MB36_PARUW/28-317; Protochlamydia outer membrane protein  ali follow..  9  1............................................TFEVGYRHDDISWNQKAPSDLDIVQIGLKGRTMLGYNFYGRASVNWGWIVD--------GDYKRTFSENFVYDLSIGVGYPFYFCTLALSPVVGYALISVEQGGLGFDSTGAVNPNSYGSYTHKVGVDFNYRPY-GETWNLYAEVEYHFA-RFKGRYHDELLSQHHIHRSKHAHAWTFALGADYDFSNDWTAGLCVK 240
12 -9.330PF16961.5; Q5LG58_BACFN/59-257; Putative OmpA-OmpF-like porin family  ali follow..  9  7..............................................................................................STNWADKKLMVGFEGGWDQWKLNLGGGVSFTNNPGYPAVPGTIDDSNKNNSADENMGEIPNYRAVADAQSFAYNVSAGVDRYFNIKRVPNLMWYTGIRVGFAYGENEMKYDEETSMGKSIAESWNLRGAIGVDYFVLPALYIGAQID 158
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.