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Query: PF03821.16; H0V9D9_CAVPO/28-261; Golgi 4-transmembrane spanning transporter, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst HVVMSVLLFIEHAVEVSHGKASCRLPKTLYLRIADLVSSFLLISMLFFISLSLLVGVIKNREKLLLPFLSLQIMDYLLCLLTLLGSYIELPAYLKFASRTRSGPSKVPLMTLQLLDFFLSILTLCSSYMEVPTYLNFKSMNHMNYFPSQEGVTHSRFVQMMLIFTIAFISVLILKVYMFKCVWRCYQFIKYMNSASERSDSKSPPKVVLPSYEEAISLPSKSPVGGPAPPPYSELast
1 -138.000PF03821.16; H0V9D9_CAVPO/28-261; Golgi 4-transmembrane spanning transporter  ali  100  1HVVMSVLLFIEHAVEVSHGKASCRLPKTLYLRIADLVSSFLLISMLFFISLSLLVGVIKNREKLLLPFLSLQIMDYLLCLLTLLGSYIELPAYLKFASRTRSGPSKVPLMTLQLLDFFLSILTLCSSYMEVPTYLNFKSMNHMNYFPSQEGVTHSRFVQMMLIFTIAFISVLILKVYMFKCVWRCYQFIKYMNSASERSDSKSPPKVVLPSYEEAISLPSKSPVGGPAPPPYSE 234
2 -13.000PF15664.5; E2RC46_CANLF/29-168; Transmembrane protein 252 family  ali follow..  19  1...................................................................................................................................................SSGSIFNCRGNLILAYMLLPLGFVILLS----GIFWSTYRQASKSKHGALPLATVDRPDFYPPAYEESLPCPTEGEVSDIPPPLYTE 100
3 -10.800PF11669.8; H9G3Z2_ANOCA/43-144; WW domain-binding protein 1  ali follow..  29  59.......................................................................................................................................................................................NLIAYHGACNYPPSMVDLRMLASFKLPAYEEVAHRPT------TPPPPYS. 102
4 -9.210PF15860.5; B4LQ83_DROVI/70-160; Domain of unknown function (DUF4728 topsan)  ali follow..  14  2...............................................................................YLGIFVLNLLASAMLILGTMKERHLMLLPWLINSGVGLILSIIYNFVVLILA---------------------LSSAQIDRIVPVLIVTFIGLGLHIYIYCGIYSLFKQIQ............................................ 91
5 -8.840PF15345.6; M4AQD5_XIPMA/9-221; Transmembrane protein 51  ali follow..  14  6.............................................................................................................YALCALGVGLVALGVVMIV-LVPANTGFNNSSSGSGGDDGIDGKRNKASSVAFVLAGSGVAMLLLSLCL-RRQEIQNQRDAAREQEERETAEERAQRYAVPSYEEVVGSQSNLRPSVSQLPSYDD 146
6 -8.480PF15957.5; B4QL66_DROSI/113-224; Commissureless  ali follow..  24  13........................................................................................................................................................................IVFTLILISMVFCICSCFLYHQFRTPDVEDPVPEYTLVSGLPSYEAALELLQKSPQSSCLYPSVFN 106
7 -7.980PF05297.11; LMP1_EBVB9/1-386; Herpesvirus latent membrane protein 1 (LMP1)  ali follow..  18  1.........MEHDLE--RGPPGPRRPPRGPPLSSSLGLALLLLLLALLFWLYIVMS------------------DWTGGALLVLYSFALMLIIIILIIFIFRRDLLCPLGALCILLLMITLLLIA-------------------------NLHGQALFLGIVLFIFGCLLVLGIWIYLLEMLWRLGATI............................................. 137
8 -7.420PF12526.8; Q8JJN7_HEV/686-799; Protein of unknown function (DUF3729 topsan)  ali follow..  11  26................................................................................................................................................................................................SSCFSPLEPPASGSLPPAEIDPPVTVDAPSPSILALPRPSVF 67
9 -7.400PF15105.6; G1LS64_AILME/13-201; TMEM61 protein family  ali follow..  14  8................................................................................MTVSGTVLLVAGTLCFGDAGAQPGQPAPPTGRPVPEAPSPLLRSVSFFC--------------------------GAGGLLLLFGLLWSIKASTRGPPRWDPYRLSRDLYYQTESSEKESYRLPELAAIPTYEEAMCCSLAEGPPTPPPPSYES 167
10 -7.370PF14991.6; U3K7R0_FICAL/2-113; Protein melan-A  ali follow..  25  52.........................................................................................................................................................................................YKSLRSKSSSVSTEGEILECKMALQDYKDFNSVVPDAPAADLSPPPYS. 111
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.