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Query: PF03896.16; B0XFI4_CULQU/3-291; Translocon-associated protein (TRAP), alpha subunit, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SLLIFALLVLPAVLLTVDGGSRLMAHAAEDELDEELDVEVEGEDASVTGQAEETETDDEPETTKSPDADTFLLFTRPLHSAGSGSQFELPAGYPVEFLVGFANKGSDDFIVETVEASFRYPMDFNYFIQNFSAIAYNREIKPGHEATVSYSFLPSESFAGRPFGLNIALNYRDASGNQFSEAVFNETVSIIEVDEGLDGETFFLYVFLAAVVVLLLVLGQQFLGSYGKRKRSPAVRKTVETGTTNTKDVDYEWIPAETLKKIQNSPKGGKVSPKQSPRQRKAKRAVGDDLast
1 -111.000PF03896.16; B0XFI4_CULQU/3-291; Translocon-associated protein (TRAP), alpha subunit  ali  100  1SLLIFALLVLPAVLLTVDGGSRLMAHAAEDELDEELDVEVEGEDASVTGQAEETETDDEPETTKSPDADTFLLFTRPLHSAGSGSQFELPAGYPVEFLVGFANKGSDDFIVETVEASFRYPMDFNYFIQNFSAIAYNREIKPGHEATVSYSFLPSESFAGRPFGLNIALNYRDASGNQFSEAVFNETVSIIEVDEGLDGETFFLYVFLAAVVVLLLVLGQQFLGSYGKRKRSPAVRKTVETGTTNTKDVDYEWIPAETLKKIQNSPKGGKVSPKQSPRQRKAKRAVGDD 289
2 -13.300PF10633.9; Q67M97_SYMTH/263-339; NPCBM-associated, NEW3 domain of alpha-galactosidase  ali follow..  13  3..........................................................................................AGRKNGVTLEVKNTGTTEITGINFASTL--PPNWTATFSPDSID----ALAPGESRQVTVEVTPNSKALAGDYLVTLRA........................................................................................................................ 75
3 -11.300PF07610.11; F0NZP4_WEEVC/51-148; Protein of unknown function (DUF1573 topsan)  ali follow..  4...............................................................................SESNFNYGDVKMNESKDHYFVITNEGKSPLVIKDARAT-------------TVPEWPKEPIPAGGKDSIKVQFTAGTVLGNTQKKVSLTT........................................................................................................................ 83
4 -11.200PF12690.7; C4L5A1_EXISA/43-141; Intracellular proteinase inhibitor  ali follow..  2..................................................................................DTEMAYDASAKTLSATISMTNPNEEAVDV-----TFNSSQRFQLVVKKFTESVIEEKWEANDKKVFDEVF--PLTLEPGEYSVEVIG........................................................................................................................ 94
5 -10.700PF14874.6; Q4DUQ4_TRYCC/1589-1690; Flagellar-associated PapD-like  ali follow..  15  1.........................................................................VPTLSVMPSVLSFGRVIRGNRYALPVVFTNTSTVPCRY-----RVTLPTECKDILRVHYP---RHFLAPGLTVMAQVEISGTQPLGAMSFSLNVTH-----EGGLIPVKVEIETV..................................................................................................... 102
6 -10.600PF15780.5; G3VKZ4_SARHA/34-131; Abnormal spindle-like microcephaly-assoc`d, ASPM-SPD-2-Hydin  ali follow..  10  1......................................................................AFLRLSHFSRPPFLCFGDVRVGVSRTLPLVLDNPNEEGVEVSVARLP-----------KGFSISPQSCALQSKERISLSITWTPAKE.................................................................................................................................... 79
7 -10.200PF05753.14; Q9VUZ0_DROME/9-186; Translocon-associated protein beta (TRAPB)  ali follow..  12  30.......................................................................................YLVEKSDLLVRYTIFNVGSGAATKVRLVDSGFHPEAFDVVGGQPTAV----RIAPQTNFTHVLVVRPK---AFGYFNFTAEVSYKAVEESETLQLAVSSEPGEGGIVNLNEYNKRFAFAVMTLPSLAIPLALWHQSKSKYERSGK......................................................... 178
8 -9.420PF04442.14; G4QNV2_GLANF/60-203; Cytochrome c oxidase assembly protein CtaG/Cox11  ali follow..  13  17..................................................KTSNEAAVYESVIIDESRTIKVEFITRTHSRAQTAEVAVHPGEMSEVAFYVRNPTDRDIIAQAIPS---SPGTAALFVNKTECFCFHQPLKAGEEALMPMKFYVDPQLPKDITVFTLQYTLYD.................................................................................................................... 144
9 -8.670PF12589.8; B9GIY1_POPTR/202-287; Methyltransferase involved in Williams-Beuren syndrome  ali follow..  14  38........................................................................................................................................................................................................................................SDRNRPKKKQKITRKGKGRDWI-----FKKKEQLRRKGNAVPPDTRYTGRKRKA... 86
10 -8.660PF07760.11; E4NUD8_HALBP/21-329; Protein of unknown function (DUF1616 topsan)  ali follow..  14  154...ALNVLLVVSILLAAGSTGYAIFVPPPGEQFSELYLLTEDESGDLVADEYPT---------------------------------EFIRGEAKPLHIGIGNHEGREYTVVAQLHRVERQNNATVVRERTELHRYTQTVGANSTWSTKTTVSPSM--TGDRLRLTYLLYKGSAPENPTIDNAYRENHLWVN................................................................................................. 309

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.