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Query: PF03955.14; CAP9_ADE02/7-116; Adenovirus hexon-associated protein (IX), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst DGSIVSSYLTTRMPPWAGVRQNVMGSSIDGRPVLPANSTTLTYETVSGTPLETAASAAASAAAATARGIVTDFAFLSPLASSAASRSSARDDKLTALLAQLDSLTRELNVLast
1 -81.200PF03955.14; CAP9_ADE02/7-116; Adenovirus hexon-associated protein (IX)  ali  100  1DGSIVSSYLTTRMPPWAGVRQNVMGSSIDGRPVLPANSTTLTYETVSGTPLETAASAAASAAAATARGIVTDFAFLSPLASSAASRSSARDDKLTALLAQLDSLTRELNV 110
2 -6.880PF17400.2; Q3Y0Y1_ENTFC/3-108; Family of unknown function (DUF5406 topsan)  ali follow..  10  9..GTHTIKVSFQRWDYKGFVTFRRGGNCKGLDVLALDEDDLYYQKLTDNPIGFGLLPEDDEGNEWFKMTLTN-------DNGDELSVEDTWSYLSDYIVSVEIIE..... 104
3 -6.820PF08471.10; A1BHC2_CHLPD/31-131; Class II vitamin B12-dependent ribonucleotide reductase  ali follow..  13  1DGSKVFEMSDIEVPKWSQMAADILAQKYFRKTGVPQRDEAGNTLLDDAGNPVTGSEHSIREVVHRLAGCWKSWGEKYRYFDTPEDAEAFYDETAFMLLRQ.......... 101
4 -6.470PF08910.10; C3XRJ3_BRAFL/8-114; Aida N-terminus  ali follow..  11  1............VAKWHGAFKKATDFDSWGQLVEAVDEYQMLSRQLRKEGSSSDSRTFTDDQKRILSKVSTCLDLRSQALQAAHGTSLEDLEELKKVEPMLKNL...... 95
5 -6.450PF17285.2; V5INM3_NEUCR/45-378; PRMT5 TIM barrel domain  ali follow..  13  219........IPKRVPRWFSLDKKIFSLNKAGHPSLTRHHQDLINRYMRLKNILINVGPSTESLVEAPSKMEVDFPPLSEASKAVKENRKPYAPPYNEYVDYMKYLERH... 334
6 -6.270PF15399.6; CK021_HUMAN/20-132; Domain of unknown function (DUF4620 topsan)  ali follow..  18  10QSGVEPPDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEPVDHPA....................................................... 64
7 -6.060PF08066.12; V2XRV5_MONRO/27-118; PMC2NT (NUC016) domain  ali follow..  12  1............................................................KATRNSMLLPVDIPYHRSMDSEFSKELDNFSARVISLANKL......... 41
8 -5.970PF13995.6; J7SK57_MORMO/37-124; YebF-like protein  ali follow..  12  19..QVKYDFVQSRYPRWQDDKALLGSKP................................................................................... 43
9 -5.760PF02213.16; A0A098VUY2_9MICR/313-359; GYF domain  ali follow..  25  7YGNIQGPFPSEQMTHW.............................................................................................. 22
10 -5.390PF07328.11; B9K404_AGRVS/5-145; T-DNA border endonuclease VirD1  ali follow..  9  20...................................FKVVSTRLRSAEYESFSRQARRLGLSDSMAIRIAVRRIAGFLEIDAETRHEMEAILHSIGTLSNNIAALLNSYA. 93
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;