Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF03969.16; ZAPE_ECOLI/4-371; AFG1-like ATPase, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .
# Score Template Links and tools%idFirst VTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSTPPAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLHDETRAQMDKLWLALAGGKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEEYLKRELast
1 -129.000PF03969.16; ZAPE_ECOLI/4-371; AFG1-like ATPase  ali  100  1VTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSTPPAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLHDETRAQMDKLWLALAGGKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEEYLKRE 368
2 -11.200PF00308.18; DNAA_STRCO/317-535; Bacterial dnaA protein  ali follow..  19  37......................................................................LFIYGESGLGKTHLLHAIGHYAPGTRVRYVSSEEFTNEFINSIRDGKGDS-------RKRYREMDILLVDDIQFLADKEST-FFHTFNTLHNANKQIVLSSDRPPKQLFEWGLITDVQPP-IAILRKKAVQEQLNAPPE............................................................................................................................................................... 189
3 -10.600PF02367.17; A5G3Y0_GEOUR/8-137; Threonylcarbamoyl adenosine biosynthesis protein TsaE  ali follow..  21  24......................................................................IALVGDLGSGKTQFAKGVAAGLAIDPTIPI-------------------TSPTYTLVNIYKGRLPLYHFDLYRLHGDQDIIDLG-FEEYFYGNGVCLVEWAERLKDALPEEHLE........................................................................................................................................................................................ 117
4 -10.400PF00910.22; A7M6L1_9SECO/473-576; RNA helicase  ali follow..  14  1......................................................................VYAYGESRTGKTLVVDKLITDFQNHFGLGKDTVYSRNPIDQYWSGYRRQP---------------IVSIDDFQMIPLVSSAPLPLTMAAIEEKGMFIFCSSN.................................................................................................................................................................................................... 103
5 -10.400PF07652.14; Q32ZD8_9FLAV/1675-1822; Flavivirus DEAD domain  ali follow..  13  7......................................................................IVLDPHPGAGKTRKVLPEFIRQAVERRLWT--RVVAAEMAEALNQQHTGKEIVDLMCHATVPNYNMFIMDEAHFTDPSSIAARGYISTKVDMGEASAVFMTATPPGSREP............................................................................................................................................................................................ 142
6 -10.100PF05621.11; B7J739_ACIF2/21-211; Bacterial TniB protein  ali follow..  15  30..............................................................PVRPRMPNLLIVGDSNNGKTTVIRRFQKEAPPSADEKGLYIAILERFWTPYRATDSASKLRYQVVHLMRDHVRILVIDEFH-GTVTKQREVMNAIKLLCNEAIPIVGVGIREAVRVLHTDPQHASRFDVVTL.............................................................................................................................................................................. 184
7 -9.770PF01695.17; Y4IQ_SINFN/60-238; IstB-like ATP binding protein  ali follow..  22  49....................................................................ANILLFGPPGGGKSHLAAAIGLAL-IENGWRVLFTR-TTDLVQKLQVARRELQLESAIAK--LDKFDLLILDDLAYVTKDETSVLFELISARYERRSIMI-TANQPFGEWNRVFPDPAMTLAAVDRLVHHATIF...................................................................................................................................................................... 179
8 -9.410PF03266.15; NTPTH_METAC/3-167; NTPase  ali follow..  15  2......................................................................IAVTGSPGVGKSTVVAKTAEKLAEKPGFKI---SHVKGSGPRLGKYHVNLDDLERIGANAVRNADLVVIDEIGPMELISQSFVSAVEEVLESDKPVLAV-------------LHHSSRHPLAQRFRKGFEVLTVDKGN................................................................................................................................................................ 156
9 -8.760PF07728.14; Q82S33_NITEU/475-632; AAA domain (dynein-related subfamily)  ali follow..  25  1.....................................................................NLILQGPPGTGKTWLAKRLAFALMGQKDDSVQFHDFVRGWRPKLSLADGVFMEAIKAASKDPSSKFVVVIEEINRGNP--AQIFGELLTLLIPENLYVVGTMNIADRSLLVDLALRRRF.................................................................................................................................................................................... 158
10 -8.740PF13401.6; B2UJB3_RALPJ/42-210; AAA domain  ali follow..  18  1................................................................DSQESILLVCGPTGAGKTTLAKFMVEQAPASGETKFSWRLFYQRILNQLGTSGNSLAALRTAVERGLRQVQFMVIDEAAFRDTQRNSKLEVQLDTL-ECGTQIVLVGSYDLYHLV............................................................................................................................................................................................. 169
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.