Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF04009.12; D5E9I0_METMS/4-109; Protein of unknown function (DUF356 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .
# Score Template Links and tools%idFirst FAVIRGEDKNKVRIALHDLQQYGSMKFSSCPKRIEPNYADTLLVKVVGVPLRSNCKFAALVGLENNAGSAINKLRKIHPPAHIVIISPRHDAYEELMDNSEIYPEFLast
1 -68.900PF04009.12; D5E9I0_METMS/4-109; Protein of unknown function (DUF356 topsan)  ali  100  1FAVIRGEDKNKVRIALHDLQQYGSMKFSSCPKRIEPNYADTLLVKVVGVPLRSNCKFAALVGLENNAGSAINKLRKIHPPAHIVIISPRHDAYEELMDNSEIYPEF 106
2 -6.440PF00573.22; RL4_DESPS/21-208; Ribosomal protein L4/L1 family  ali follow..  11  52....KGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQEGNLIVLDNKTKEFASTMKTLELANALIVMDDASENLSKSCRNVHGYRIL 159
3 -6.090PF02505.14; Q0W5P0_METAR/19-159; Methyl-coenzyme M reductase operon protein D  ali follow..  13  9..VLNVETAQKLIDELNKIDGITRMVVHGPLLEGKFGATDKKYLNIKGEQVELTVQVGRIW-IEITDTPVIEQVRAA............................. 91
4 -5.980PF08203.11; G0WGQ4_NAUDC/18-104; Yeast RNA polymerase I subunit RPA14  ali follow..  14  5........................IHTTDQPKHVSKEEVLSFLNNFITEK-DGIASGDAMISIDTTLSSSLSQLKRLQPPS......................... 87
5 -5.950PF00817.20; Q74KV6_LACJO/16-168; impB/mucB/samB family  ali follow..  13  7...............YASVEMRDNPSIRNKAVLIGGDPKKNKGHGVVATANYIARSYGA------HSAMPTAKAVRLIPAEKLVIIQPNFEKYRAVSAEIHQL... 88
6 -5.730PF02887.16; D5C1C2_NITHN/363-477; Pyruvate kinase, alpha/beta domain  ali follow..  11  9.................................................YLANHFDIKAIAALTESGSTP-LWMSRISSAIPIYALTRHVETRRKVTLYRGVCP.. 62
7 -5.720PF13565.6; Q8XFA0_RALSO/62-134; Homeodomain-like domain  ali follow..  8  14............INGLYDELR------PGKPRTIDDERVAELIKTTLHTKPADGSTHWSVRAVAAETSISPTSVHRY............................. 72
8 -5.370PF12574.8; A0A0F3MK43_9RICK/404-636; 120 KDa Rickettsia surface antigen  ali follow..  14  105..SHSVQLSASVNGATKTITKCRTIDI---PSTVEKGPLDLALVAQDSTGKNMPESKAVYFTVHYDQDGKIVEMTHPEPLGEIFTLPITKEKYEQLHKEI...... 215
9 -5.330PF13177.6; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit  ali follow..  14  71........................VYAAPEGRQIKVDEIRRLKAEFSKSAVEGNKKIFIIKDADKMTNGAANSLLKFEPGAGVYIFMLTTNKSAVLPTIRSRTQVI 154
10 -5.300PF01375.17; E2BA_ECOLX/1-263; Heat-labile enterotoxin alpha chain  ali follow..  7  22.DYFRADSRTP-----DEVRRSGGLIPRGQDEAYERGTPINLYDHARGTATGNTRYNDGYVSTTTTLRQAHF-IYVVAAAPNLFDVNGV................. 118
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.