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Query: PF04086.13; E4ZN70_LEPMJ/26-304; Signal recognition particle, alpha subunit, N-terminal, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NVINSLIRDVFIEERIQPQADDAGAKPSYRKDGYTLKWTASKDLGLMFVAVYQSLVHLTWIDKLLDNVRALFIGLYGEQLKTERSSVVNCDKFASYFDRQIHELEGASDSGAPSIKLTTPESSTDNDSADERAPQPPSLQKPQRPLYDTSADSTPVPTPDTSRPTTPAHSGILTGKTRPLGGKMSRRDKKKASAFNSAPASSGDEASVKRKAKGSAKKGRVWGEFGAEEEDDSVLDYSQSDVRGETSGNEALEEIKQETWGRKTNKGEFVLKDLDDEMDLast
1 -89.400PF04086.13; E4ZN70_LEPMJ/26-304; Signal recognition particle, alpha subunit, N-terminal  ali  100  1NVINSLIRDVFIEERIQPQADDAGAKPSYRKDGYTLKWTASKDLGLMFVAVYQSLVHLTWIDKLLDNVRALFIGLYGEQLKTERSSVVNCDKFASYFDRQIHELEGASDSGAPSIKLTTPESSTDNDSADERAPQPPSLQKPQRPLYDTSADSTPVPTPDTSRPTTPAHSGILTGKTRPLGGKMSRRDKKKASAFNSAPASSGDEASVKRKAKGSAKKGRVWGEFGAEEEDDSVLDYSQSDVRGETSGNEALEEIKQETWGRKTNKGEFVLKDLDDEMD 279
2 -10.900PF13774.6; W4ZKU5_STRPU/29-108; Regulated-SNARE-like domain  ali follow..  16  2.............EQVLMKIPPQNAKLTYSHGAYLFHYVSDE--RIIYMCITDDDFERSRAFAFLQEIKKKFTATYGSRVHTALP-----FAMNSEFSR.................................................................................................................................................................................... 80
3 -9.040PF03276.14; GAG_SFVCP/9-622; Spumavirus gag protein  ali follow..  8  384.PLHQLLKGIADQEGVATAYT------MLSGQNYQLVSGIIRGYGQAVVTAMQQ-----RLDQEIDDQTRA-----------------------ETFIQHLNAVYEILGLNARGQSIRASVTPQPRPSRGRGRGQSAPEPSQGPVNSGRGRQCPAPGQNDRGSNIQNQGQENSSQGGYNLRSRTYQPQRYGGGRGRRWNENTNNSETRPTEQSPQTPRPIQAGSGVRGNQSQTYKPAAGRGGRGNQNRNQRSSGAGDS..................... 614
4 -8.120PF17090.5; G8NRH3_GRAMM/22-85; Uncharacterised protein family  ali follow..  5  1........................APSIDIIGSFFPVWMVCLTIAIVLASILRLILLRYQFEAEIGPVALFYPSV............................................................................................................................................................................................................ 51
5 -7.510PF15860.5; B4LQ83_DROVI/70-160; Domain of unknown function (DUF4728 topsan)  ali follow..  25  6FVLNLLASAMLIKERH-----------------MLLPWLINSGVGLILSIIYNLALSSAQIDRIVPVLIVTFIGL............................................................................................................................................................................................................ 73
6 -7.430PF06939.11; Q971Q5_SULTO/1-112; Protein of unknown function (DUF1286 topsan)  ali follow..  15  40...NSLIDRLGHRELLTGRGYIPVRSPLTHTYPRSVLWGLLPTIPLIFLIHY--ALIEVLVSGVIVGPTHMFL.............................................................................................................................................................................................................. 112
7 -7.390PF11750.8; Q15V00_PSEA6/3-124; Protein of unknown function (DUF3307 topsan)  ali follow..  14  7..AAHILGDFYIQKDSWVTCRNNHHFASWGLGKHVLSHVV---LLTTAIWLAGFLTAQGWIAIVVIGFSHLLIDVWKSYQPNKLSYFL----LDQFFHIVI.................................................................................................................................................................................. 98
8 -7.240PF14480.6; DPO3_BACHD/11-83; DNA polymerase III polC-type N-terminus I  ali follow..  12  2..FKLLMEQLLIPEDVTANHLKDGKIEKLTIKKDERRWH--------FQLSIPTVLPASIYELLADRLVQTFSHIAKVSFQ...................................................................................................................................................................................................... 72
9 -7.010PF09881.9; A6UTX5_META3/3-72; Predicted membrane protein (DUF2108 topsan)  ali follow..  16  22DILNKIIMFAFLEA------------------------------GLIGLVASFYYLDVAMVSSILEPISTIVL.............................................................................................................................................................................................................. 64
10 -6.890PF13042.6; Q81NY7_BACAN/2-162; Protein of unknown function (DUF3902 topsan)  ali follow..  10  59.............DKKISKWLIKTAVTSFSFAVLGISFCIIHELSLSLMVWYWLVMLVLFLTTIISLVSLVFVNRKNHNF....................................................................................................................................................................................................... 129
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.