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Query: PF04269.12; C5BDA2_EDWI9/7-112; Protein of unknown function, DUF440 topsan, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .
# Score Template Links and tools%idFirst RLNEEETLDQAYDIFLELAADNLDPADVLLFNLQFEQRGAAELFDPAEDWQEHVEVEVDLNPDFYAEVVIGLTNGNPDSDDIEDVFARILICREKDHKMCHILWKELast
1 -76.100PF04269.12; C5BDA2_EDWI9/7-112; Protein of unknown function, DUF440 topsan  ali  100  1RLNEEETLDQAYDIFLELAADNLDPADVLLFNLQFEQRGAAELFDPAEDWQEHVEVEVDLNPDFYAEVVIGLTNGNPDSDDIEDVFARILICREKDHKMCHILWKE 106
2 -6.990PF00545.20; E4NAW1_KITSK/113-192; ribonuclease  ali follow..  12  2........................PAQALDTLGLIARGGPYPYRSDGIVFENRENRLPRQGSGYYHEFTVVTPGSDDRGTR------RIVTGGAGE.......... 67
3 -6.130PF13444.6; C7JC40_ACEP3/46-153; Acetyltransferase (GNAT) domain  ali follow..  9  9........EMGARPEGETLRLKRDIDEFDNVADHLDHAIASDARGVVGTYRLVQSDAAKKIGRFYSSSEYDITPLKEFPGKLLEVGRSCVDKNYRGRTAMQLLWR. 108
4 -5.800PF02424.15; C5BM31_TERTT/32-314; ApbE family  ali follow..  11  135.....DLGGIAKGYAVDRVAQLLENAGVRNATISAGGDSQIVGDKRGKPWI--IGIKNPRDGGKEEAEAAILLPLENTAISTSGDYERYFIDQKTGERVHHII... 230
5 -5.780PF03635.17; M4CD11_BRARP/13-749; Vacuolar protein sorting-associated protein 35  ali follow..  14  27.....DALKYSAQMLSELRTSKLSPHELRKLEIFFMEE--TRRGCSVIELYELVQHAGNILPRLYLLCTAGSVYIKTKEAPAKEILKDLVMCRGIQHPLRGLFLR. 136
6 -5.680PF14902.6; F9D023_PREDD/8-146; Domain of unknown function (DUF4494 topsan)  ali follow..  4  10KTQEDGNQKPVTEQYVVDAFSFTEAEASITEEMSAYISGEFKVTGMKPAPYHEIFFSENAKDDKWYKAKLQFITIDEKTEKEKRSNVNYLVQAASLPGAVRNV... 112
7 -5.630PF05036.13; Q72F11_DESVH/133-209; Sporulation related domain  ali follow..  14  1..........SGKAFYIDIRRFAYKSDALRLVRSLEKTG----------LASARAVRLEGTSNKAWMVAVGPFRNFHDAAGVRSTLQR.................. 68
8 -5.630PF09982.9; C6XMW8_HIRBI/40-335; Uncharacterized protein conserved in bacteria (DUF2219 topsan)  ali follow..  10  53...............FAVGHSVFTPRDISETEFIPDQHPYAGYLYLEATSLIE-----TENAIDQVSIRLGQVGKSAGGEWLQEEFHSLISDDLPLG------WEN 132
9 -5.580PF00690.26; AT2B4_RAT/46-116; Cation transporter/ATPase, N-terminus  ali follow..  18  1...................................................AHYGSVQEICARLKTSPVEGLSGNPADLEKRRLVFGKNMIPPKKPKTFLELVWEA 55
10 -5.470PF09189.10; Q5SLZ2_THET8/94-166; Domain of unknown function (DUF1952 topsan)  ali follow..  6  4......................FPPWLLERYLEEWGGTREGEGVYRLPGAVVRFREVEPLKVGSLSIPQLRVEVEGEEAERWFERIAF.................. 69
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.